{"id":"W2143861586","doi":"10.1186/1759-8753-4-28","title":"A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank","year":2013,"lang":"en","type":"article","venue":"Mobile DNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Intron; Group II intron; GenBank; Group I catalytic intron; Biology; Genetics; Genome; Computational biology; Phylogenetic tree; RNA splicing; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00414028,0.005018216,0.001804287,0.005029442,0.002007829,0.002554544,0.003260079,0.001392863,0.02276006],"category_scores_gemma":[0.0085201,0.002219855,0.002255236,0.003203342,0.0007059628,0.002666127,0.001980885,0.002308282,0.0186395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001156129,"about_ca_system_score_gemma":0.0033178,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005198839,"about_ca_topic_score_gemma":0.004908327,"domain_scores_codex":[0.9981219,0.0002746431,0.0003000555,0.000644647,0.0004579599,0.0002007558],"domain_scores_gemma":[0.9966163,0.001396988,0.0004037204,0.0004187895,0.0008421136,0.0003221205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003468319,0.001370146,0.01810909,0.004721691,0.0008914293,0.001464957,0.001820198,0.006219975,0.1293357,0.004637787,0.2673998,0.560561],"study_design_scores_gemma":[0.00207902,0.001666387,0.04696814,0.00104734,0.001069021,0.003946712,0.001322304,0.2601385,0.2521087,0.02405878,0.404404,0.001191103],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01369834,0.0005823497,0.4791652,0.0004619929,0.0001439822,0.002195649,0.04118947,0.457815,0.004748041],"genre_scores_gemma":[0.0249449,0.0005795917,0.859998,0.0004637619,0.00007008917,0.002939604,0.09185699,0.0150797,0.00406737],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.02276006,"threshold_uncertainty_score":0.07613999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01211639478589936,"score_gpt":0.2421951376997121,"score_spread":0.2300787429138128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}