{"id":"W2143873581","doi":"10.1128/jb.01997-07","title":"Interactions between CdsD, CdsQ, and CdsL, Three Putative<i>Chlamydophila pneumoniae</i>Type III Secretion Proteins","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Canadian Institutes of Health Research","keywords":"Biology; Chlamydophila pneumoniae; Chlamydophila; Secretion; Bacterial protein; Type (biology); Microbiology; Virology; Chlamydiales; Genetics; Gene; Chlamydia; Biochemistry; Chlamydia trachomatis; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001870397,0.0001805794,0.0003733995,0.0001031168,0.0002593275,0.00002919648,0.0001829038,0.0001113801,0.001336663],"category_scores_gemma":[0.00005810291,0.0001526152,0.0001140253,0.0001650532,0.0003521941,0.0006543471,0.000152101,0.0005003817,0.0001310186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001435046,"about_ca_system_score_gemma":0.00003416883,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001684173,"about_ca_topic_score_gemma":0.000129751,"domain_scores_codex":[0.9987581,0.0001129295,0.0005533718,0.0002138089,0.0001113912,0.0002503805],"domain_scores_gemma":[0.9990138,0.0001065944,0.0005148374,0.0001441334,0.00006185492,0.0001587987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001245342,0.00007951531,0.03901914,0.000005089782,0.00007326684,0.00006891285,0.0005609014,0.00003173836,0.9558802,0.00001330762,0.0005182283,0.003625173],"study_design_scores_gemma":[0.0006314937,0.0008334989,0.9466227,0.00003845634,0.00006284165,0.004702523,0.00007071118,0.00003796101,0.003687351,0.0002916448,0.04280459,0.0002161933],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961339,0.00004037379,0.001247,0.00101071,0.0006212515,0.0001694041,0.00001510367,0.00001566533,0.0007466345],"genre_scores_gemma":[0.9974815,0.0001746169,0.00140936,0.0001603893,0.0003143848,0.000004580345,0.00001188464,0.00001788626,0.0004254484],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9521928,"threshold_uncertainty_score":0.9995763,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02173204584415673,"score_gpt":0.2575416674608136,"score_spread":0.2358096216166569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}