{"id":"W2144148663","doi":"10.1093/jac/dkm464","title":"Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15","year":2007,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":825,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Multilocus sequence typing; Pulsed-field gel electrophoresis; Virulence; Biology; Microbiology; Escherichia coli; Serotype; Phylogenetic tree; Ciprofloxacin; clone (Java method); Pathogenicity island; Typing; Genotype; Genetics; Gene; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007130069,0.0002106649,0.0003894239,0.00009081675,0.0000466587,0.00002217022,0.0003826906,0.0001672782,0.0001107039],"category_scores_gemma":[0.00007819922,0.0001907656,0.0002569141,0.0001658692,0.0001674517,0.00001734559,0.00005332656,0.0001911965,0.000002977262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002004494,"about_ca_system_score_gemma":0.0001126233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001351518,"about_ca_topic_score_gemma":0.00002488885,"domain_scores_codex":[0.9983672,0.00004030979,0.0008537936,0.0002445379,0.000187308,0.0003068315],"domain_scores_gemma":[0.9984714,0.0000128594,0.0008151026,0.0002880517,0.0003211085,0.00009146328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001200947,0.0002100482,0.0197328,0.00004498499,0.000144706,0.00001276791,0.0001719477,0.000007786509,0.9661897,0.000004130181,0.01142347,0.0008567325],"study_design_scores_gemma":[0.001118793,0.0003739466,0.02422046,0.0001290639,0.00002165517,0.00009868859,0.0001511174,0.000002110482,0.9674466,0.000006172344,0.006240611,0.0001907717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925283,0.0003142645,0.005704794,0.0003173733,0.0007433638,0.0001378953,0.000008239368,0.000005164015,0.0002405981],"genre_scores_gemma":[0.9873456,0.0007221408,0.01036476,0.000456815,0.0007453742,1.660309e-7,0.000008662212,0.00004052187,0.0003159374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005182863,"threshold_uncertainty_score":0.7779196,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007012317303947851,"score_gpt":0.2534859466118707,"score_spread":0.2464736293079228,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}