{"id":"W2144198721","doi":"10.1007/s10126-010-9335-6","title":"Development and Experimental Validation of a 20K Atlantic Cod (Gadus morhua) Oligonucleotide Microarray Based on a Collection of over 150,000 ESTs","year":2010,"lang":"en","type":"article","venue":"Marine Biotechnology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Institute for Marine Biosciences; Genome Canada; Atlantic Cancer Research Institute; Memorial University of Newfoundland","funders":"Division of Ocean Sciences; Genome Atlantic; Natural Sciences and Engineering Research Council of Canada; Memorial University of Newfoundland; Atlantic Canada Opportunities Agency; Genome Canada","keywords":"Biology; Gadus; Atlantic cod; Broodstock; Microarray; Suppression subtractive hybridization; Expressed sequence tag; cDNA library; Functional genomics; DNA microarray; Genomics; Halibut; Aeromonas salmonicida; Genetics; Complementary DNA; Computational biology; Aquaculture; Gene; Fishery; Gene expression; Genome; Fish <Actinopterygii>; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001244998,0.0008229578,0.0009100699,0.000625969,0.0008455491,0.0006389203,0.0006765833,0.0006117026,0.001584687],"category_scores_gemma":[0.0006914895,0.0006267949,0.0006828005,0.0006535318,0.0003881066,0.0004445382,0.0006106371,0.0007400496,0.001249725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007369754,"about_ca_system_score_gemma":0.001121411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002768868,"about_ca_topic_score_gemma":0.006212566,"domain_scores_codex":[0.9987418,0.0001784764,0.0001519764,0.0003581582,0.0004111596,0.000158526],"domain_scores_gemma":[0.9996138,0.00007402967,0.00005309283,0.00006362384,0.0001435428,0.00005184404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003256304,0.00002554199,0.000132456,0.00003632216,0.000003986704,0.0000123377,0.00001512946,0.0001108236,0.9984953,0.00005128115,0.00004423655,0.001039989],"study_design_scores_gemma":[0.00003926651,0.0006670455,0.008425066,0.00002550203,0.00006621123,0.0001990882,0.00006697874,0.004220467,0.9775007,0.0001220834,0.008632233,0.000035382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.788837,0.001164898,0.188553,0.0006232422,0.0003053036,0.002134238,0.01001707,0.001587104,0.006778094],"genre_scores_gemma":[0.4027358,0.00278967,0.5301385,0.001208731,0.0001180785,0.006459575,0.03781665,0.0007082695,0.01802486],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002768868,"threshold_uncertainty_score":0.006584227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005371136279566288,"score_gpt":0.2134269226240533,"score_spread":0.208055786344487,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}