{"id":"W2144330713","doi":"10.1158/1055-9965.epi-07-2615","title":"Meta-analysis of Colorectal Cancer Gene Expression Profiling Studies Identifies Consistently Reported Candidate Biomarkers","year":2008,"lang":"en","type":"review","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research; BC Cancer Foundation; Michael Smith Health Research BC","keywords":"Colorectal cancer; False positive paradox; Gene expression profiling; Adenoma; Cancer; Gene; False discovery rate; Biology; Candidate gene; Thyroid cancer; Gene expression; Medicine; Bioinformatics; Oncology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01238132,0.001515425,0.008255143,0.006179013,0.0002882949,0.001650619,0.001594421,0.001247506,0.001045146],"category_scores_gemma":[0.02607433,0.0006359663,0.008232831,0.009095611,0.0004168395,0.0009074144,0.000634046,0.0007857063,0.0001819864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001234748,"about_ca_system_score_gemma":0.001949982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002134095,"about_ca_topic_score_gemma":0.004458881,"domain_scores_codex":[0.991811,0.005105332,0.0009299557,0.001118383,0.000902661,0.000132639],"domain_scores_gemma":[0.9751859,0.02074704,0.002218134,0.0007633203,0.0009135969,0.0001719035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.002410883,0.00006946309,0.1625106,0.1141969,0.4205443,0.001197764,0.0001969729,0.00427877,0.002534527,0.00122185,0.004096719,0.2867414],"study_design_scores_gemma":[0.0006500565,0.00105342,0.1770478,0.02511199,0.7507644,0.00343869,0.0003247915,0.00376183,0.004362111,0.005176565,0.02814391,0.0001644604],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007139193,0.9901162,0.001654053,0.0004318623,0.00008019243,0.00002567701,0.000308067,0.00002412164,0.0002206442],"genre_scores_gemma":[0.2277218,0.76337,0.006888089,0.0006168351,0.0002330423,0.0001407162,0.0008036232,0.00002630674,0.0001996484],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01238132,"threshold_uncertainty_score":0.06547952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3746382160370904,"score_gpt":0.4848985658566395,"score_spread":0.1102603498195492,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}