{"id":"W2144330713","doi":"10.1158/1055-9965.epi-07-2615","title":"Meta-analysis of Colorectal Cancer Gene Expression Profiling Studies Identifies Consistently Reported Candidate Biomarkers","year":2008,"lang":"en","type":"review","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research; BC Cancer Foundation; Michael Smith Health Research BC","keywords":"Colorectal cancer; False positive paradox; Gene expression profiling; Adenoma; Cancer; Gene; False discovery rate; Biology; Candidate gene; Thyroid cancer; Gene expression; Medicine; Bioinformatics; Oncology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.003185487,0.001383756,0.01458876,0.001821642,0.00027289,0.00001238447,0.0004709963,0.00134837,0.0009596099],"category_scores_gemma":[0.002036081,0.001021628,0.009219646,0.002476428,0.001552986,0.0001343642,0.0003632669,0.0006732511,0.000009361494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001530564,"about_ca_system_score_gemma":0.002082383,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008798491,"about_ca_topic_score_gemma":0.0008204812,"domain_scores_codex":[0.9878552,0.003154234,0.005072807,0.002258265,0.0006511403,0.001008344],"domain_scores_gemma":[0.9885603,0.002366773,0.006417695,0.00132403,0.0009772179,0.0003540386],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.0006455178,0.0001590895,0.00673457,0.01011029,0.9323973,0.00008838165,0.0001337178,0.00006636277,0.001926331,0.000003459892,0.007894092,0.0398409],"study_design_scores_gemma":[0.0008702935,0.0003235873,0.001180657,0.005655053,0.9496548,0.0001986288,0.0001267659,0.00007295443,0.005032468,0.0001179176,0.03569766,0.001069225],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005231627,0.987306,0.0001320884,0.0002205317,0.002403728,0.0037616,0.0007559782,0.0001297534,0.00005869954],"genre_scores_gemma":[0.0008172244,0.9861265,0.004828258,0.0001145579,0.0001622194,0.005030276,0.001918748,0.0001405743,0.0008616753],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.03877167,"threshold_uncertainty_score":0.9999536,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3746382160370904,"score_gpt":0.4848985658566395,"score_spread":0.1102603498195492,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}