{"id":"W2144505523","doi":"10.1371/journal.pgen.1004759","title":"Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood","year":2014,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"FP7 Food, Agriculture and Fisheries, Biotechnology; Fondo Nacional de Desarrollo Científico y Tecnológico; U.S. Department of Agriculture; Office of Science; Ministerio de Economía y Competitividad; Joint Genome Institute; U.S. Department of Energy","keywords":"Gigantea; Biology; Transcriptome; Gene; Lignin; Genome; Botany; Ascomycota; Biochemistry; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007810537,0.0003507486,0.0002793049,0.0005153067,0.0002730739,0.0003470115,0.0001262843,0.0001889062,0.0007697039],"category_scores_gemma":[0.0001023228,0.000103281,0.0003626245,0.0007081257,0.0001037287,0.0002438424,0.0002298748,0.0003196013,0.0003170351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001737587,"about_ca_system_score_gemma":0.0001647236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001128567,"about_ca_topic_score_gemma":0.001376171,"domain_scores_codex":[0.999935,0.000003658394,0.000003992361,0.00002936256,0.00001509156,0.00001283814],"domain_scores_gemma":[0.999931,0.00001115835,0.00001902492,0.000009499464,0.00001145641,0.00001782591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001614062,0.00001978239,0.006546318,0.0001692524,0.00002274128,0.0002564942,0.00009839523,0.0001977225,0.9836504,0.0001006659,0.0002129689,0.00856385],"study_design_scores_gemma":[0.00002889335,0.0003067755,0.8155751,0.00008701062,0.0002165553,0.002456434,0.0005622928,0.003558448,0.1496689,0.0008161059,0.02667663,0.00004696011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9588527,0.002482781,0.004165665,0.0001788385,0.00003071389,0.00003607581,0.03184433,0.0002215495,0.00218736],"genre_scores_gemma":[0.9274601,0.002553122,0.007912615,0.000174955,0.00002799046,0.00008295624,0.05826829,0.00008365145,0.003436228],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001128567,"threshold_uncertainty_score":0.002574921,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01452827725744668,"score_gpt":0.1998342252918913,"score_spread":0.1853059480344446,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}