{"id":"W2144646532","doi":"10.1128/jcm.01484-07","title":"Comparison of Seven Techniques for Typing International Epidemic Strains of <i>Clostridium difficile</i> : Restriction Endonuclease Analysis, Pulsed-Field Gel Electrophoresis, PCR-Ribotyping, Multilocus Sequence Typing, Multilocus Variable-Number Tandem-Repeat Analysis, Amplified Fragment Length Polymorphism, and Surface Layer Protein A Gene Sequence Typing","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":338,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"York University; Centers for Disease Control and Prevention; U.S. Department of Veterans Affairs","keywords":"Multilocus sequence typing; Multiple Loci VNTR Analysis; Biology; Typing; Pulsed-field gel electrophoresis; Ribotyping; Restriction enzyme; Genetics; Variable number tandem repeat; Clostridium difficile; Clostridium difficile toxin A; Amplified fragment length polymorphism; Restriction site; Microbiology; Polymerase chain reaction; Genotype; Gene; Population; Genetic diversity","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.004389436,0.0004324005,0.002394189,0.0008294786,0.0001335742,0.00002950376,0.0004985399,0.0007159518,0.0001228068],"category_scores_gemma":[0.003066242,0.0003766098,0.0009983507,0.00135435,0.0003772629,0.0001232045,0.0001853383,0.001369716,0.000001851738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003688206,"about_ca_system_score_gemma":0.0006545954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005380227,"about_ca_topic_score_gemma":0.000112797,"domain_scores_codex":[0.9938115,0.0004701922,0.003956978,0.0007239233,0.0002918649,0.0007455446],"domain_scores_gemma":[0.9928848,0.001990397,0.00274996,0.0005288859,0.001469101,0.000376897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004100434,0.0009232315,0.05651058,0.0001153144,0.004109748,0.00002165006,0.00008758862,0.0005010128,0.9267322,0.00007809782,0.0002766888,0.00654348],"study_design_scores_gemma":[0.003779734,0.002356169,0.004655929,0.0004501182,0.004162498,0.0002743011,0.0002467281,0.005585756,0.9756631,0.00006928704,0.00231272,0.0004436508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9551867,0.001282104,0.0414211,0.0006597429,0.0002701239,0.0009071992,0.0001781341,0.00003213541,0.000062789],"genre_scores_gemma":[0.9821023,0.001544418,0.01552874,0.0001527287,0.0003801105,0.00001070685,0.0001502696,0.00003935565,0.00009131686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05185465,"threshold_uncertainty_score":0.9998686,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08374199447423293,"score_gpt":0.4240833495147144,"score_spread":0.3403413550404815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}