{"id":"W2144646532","doi":"10.1128/jcm.01484-07","title":"Comparison of Seven Techniques for Typing International Epidemic Strains of <i>Clostridium difficile</i> : Restriction Endonuclease Analysis, Pulsed-Field Gel Electrophoresis, PCR-Ribotyping, Multilocus Sequence Typing, Multilocus Variable-Number Tandem-Repeat Analysis, Amplified Fragment Length Polymorphism, and Surface Layer Protein A Gene Sequence Typing","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":338,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"York University; Centers for Disease Control and Prevention; U.S. Department of Veterans Affairs","keywords":"Multilocus sequence typing; Multiple Loci VNTR Analysis; Biology; Typing; Pulsed-field gel electrophoresis; Ribotyping; Restriction enzyme; Genetics; Variable number tandem repeat; Clostridium difficile; Clostridium difficile toxin A; Amplified fragment length polymorphism; Restriction site; Microbiology; Polymerase chain reaction; Genotype; Gene; Population; Genetic diversity","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004445236,0.0009915753,0.0003866203,0.002788503,0.0003318011,0.0006822805,0.000686678,0.000656258,0.0002018573],"category_scores_gemma":[0.007645269,0.0003497319,0.000396234,0.001549011,0.0005325447,0.0004980899,0.0007378223,0.0003920915,0.0001674741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005990755,"about_ca_system_score_gemma":0.0008466392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008879703,"about_ca_topic_score_gemma":0.01696138,"domain_scores_codex":[0.9950746,0.001675338,0.0005354074,0.000601451,0.001698325,0.0004148971],"domain_scores_gemma":[0.9925916,0.002495916,0.00104007,0.0005396917,0.002967447,0.00036517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001689793,0.0009980412,0.6902434,0.0008782081,0.0005587098,0.0002761652,0.001987757,0.002329288,0.1963764,0.0001351701,0.0002898,0.1042373],"study_design_scores_gemma":[0.0001715392,0.005701303,0.8810601,0.0001703446,0.0007439259,0.002036079,0.001445569,0.006785024,0.09840984,0.0001515076,0.003222118,0.0001027887],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930322,0.0009138033,0.004881214,0.00003982625,0.00001256925,0.00007903313,0.0001458456,0.00002841272,0.0008671375],"genre_scores_gemma":[0.9655276,0.001054433,0.03183664,0.00003415323,0.0000131177,0.00008444754,0.001178471,0.0000199219,0.0002511922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008879703,"threshold_uncertainty_score":0.02350897,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08374199447423293,"score_gpt":0.4240833495147144,"score_spread":0.3403413550404815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}