{"id":"W2144743325","doi":"10.1016/j.jmb.2007.09.051","title":"Exploring the Mitochondrial Proteome of the Ciliate Protozoon Tetrahymena thermophila: Direct Analysis by Tandem Mass Spectrometry","year":2007,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University; York University","funders":"","keywords":"Biology; Tetrahymena; Biochemistry; Proteome; Chaperonin; Mitochondrial ribosome; Mitochondrion; Mitochondrial carrier; Bacterial outer membrane; Ribosome; Gene; RNA; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007859853,0.0001889876,0.0003783072,0.0001219518,0.000100271,0.00001132121,0.0005368076,0.0001133745,0.000005261475],"category_scores_gemma":[0.0001799397,0.0001040334,0.0005209158,0.000457951,0.0002026821,0.000001577343,0.0001327879,0.0002071654,4.249243e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002438172,"about_ca_system_score_gemma":0.00006300977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001239738,"about_ca_topic_score_gemma":0.00001261374,"domain_scores_codex":[0.9985127,0.0002040478,0.0005597106,0.000226335,0.0001934744,0.0003037684],"domain_scores_gemma":[0.9987509,0.00004299384,0.0005581193,0.0004025914,0.0001867387,0.00005864227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001298614,0.00004233421,0.009478031,0.000005359917,0.00135304,0.0000040631,0.00005734275,0.00007828123,0.9882395,0.00002522576,0.00005772695,0.0005292391],"study_design_scores_gemma":[0.0004775206,0.0005978183,0.0238018,0.000008643489,0.0002674102,0.00001989184,0.00009172854,0.000002313801,0.9706067,0.0004017792,0.003590555,0.000133806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879516,0.002824198,0.007659549,0.0003401775,0.0004245142,0.0004059277,0.00001777325,0.000001273914,0.0003749266],"genre_scores_gemma":[0.9978426,0.0003889018,0.001257882,0.0001162514,0.0003088315,0.00001694873,0.000003557063,0.00001700612,0.00004806283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01763276,"threshold_uncertainty_score":0.4242359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0162788965952387,"score_gpt":0.2464325439118726,"score_spread":0.2301536473166339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}