{"id":"W2145063082","doi":"10.1186/1471-2105-10-118","title":"ACID: annotation of cassette and integron data","year":2009,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"National Health and Medical Research Council; Medical Research Council; Australian Research Council; Canadian Institutes of Health Research; Macquarie University","keywords":"Integron; Annotation; Integrase; Gene cassette; Computer science; Computational biology; Genome; Genetic genealogy; Biology; Gene; Genetics; Plasmid; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002682558,0.001816394,0.001103629,0.004862618,0.001108024,0.002059509,0.001714744,0.001186862,0.01406018],"category_scores_gemma":[0.00900605,0.0006491022,0.000879119,0.005717722,0.0005001595,0.002609401,0.002273079,0.001347609,0.009822632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007321157,"about_ca_system_score_gemma":0.001908696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002209496,"about_ca_topic_score_gemma":0.001995274,"domain_scores_codex":[0.9984555,0.0002796258,0.0003379009,0.0003448074,0.0004856581,0.00009645223],"domain_scores_gemma":[0.9958827,0.001347716,0.0005355582,0.0007241922,0.001126448,0.0003834083],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.007860239,0.0004635589,0.02247745,0.01585591,0.0004826679,0.004128739,0.004569401,0.008481115,0.2651614,0.01663727,0.2713671,0.3825152],"study_design_scores_gemma":[0.0002988953,0.0004291944,0.02245758,0.001296439,0.0003117959,0.002960676,0.0008695892,0.02695283,0.09511705,0.01400581,0.8349359,0.0003641584],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.07561187,0.003330489,0.3733262,0.001041844,0.0005190974,0.001259442,0.4204544,0.1096881,0.01476852],"genre_scores_gemma":[0.07802349,0.001496635,0.2743258,0.0002815578,0.0001134523,0.0006417749,0.6334068,0.006855548,0.004854951],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01406018,"threshold_uncertainty_score":0.04703593,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02512354785932224,"score_gpt":0.281546667153767,"score_spread":0.2564231192944447,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}