{"id":"W2145230470","doi":"10.1093/gbe/evr094","title":"Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis","year":2011,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Danmarks Frie Forskningsfond","keywords":"Biology; Arabidopsis; Genetics; Evolutionary biology; Polymorphism (computer science); Computational biology; Gene; Allele","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001611397,0.00009585258,0.0001332839,0.00005658382,0.00004057022,0.000001603154,0.00006502199,0.0001827263,0.000007513276],"category_scores_gemma":[0.00002331757,0.00009033947,0.00002108019,0.00004779368,0.0001324503,0.00000431362,0.00007726911,0.00004287239,0.000001656271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001630617,"about_ca_system_score_gemma":0.00004163091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002248788,"about_ca_topic_score_gemma":0.0001093784,"domain_scores_codex":[0.9993488,0.00003873491,0.0001688315,0.0002478223,0.00002138031,0.0001744178],"domain_scores_gemma":[0.9997348,0.000002336933,0.00007958302,0.0001194958,0.00002318435,0.00004059511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001109336,0.00002941619,0.05350357,0.00002198589,0.000007336629,5.951188e-7,0.00006699123,2.02115e-7,0.9441943,0.001232787,3.014805e-7,0.0008316094],"study_design_scores_gemma":[0.0005839227,0.0006575203,0.5969153,0.00002263846,0.00001667481,0.00004927791,0.0001036823,0.0000649904,0.3885644,0.01263671,0.0001906245,0.0001942613],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946319,0.002963584,0.001992715,0.00000795546,0.00004490529,0.0001698833,0.00001639938,0.000004348299,0.0001682865],"genre_scores_gemma":[0.99925,0.0002409628,0.0003730566,0.00001314749,0.00003000245,0.00002488706,0.00001162607,0.000006581855,0.00004976901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5556298,"threshold_uncertainty_score":0.3683937,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01113869440713498,"score_gpt":0.2197153288751617,"score_spread":0.2085766344680267,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}