{"id":"W2145365757","doi":"10.1093/molbev/msl115","title":"Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?","year":2006,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Gene duplication; Genome; Horizontal gene transfer; Adaptation (eye); Genetics; Comparative genomics; Genome evolution; Genomics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001071379,0.0001638709,0.0001560122,0.00004598175,0.00008220128,0.000009498429,0.00006911098,0.0002201272,0.000003127828],"category_scores_gemma":[0.00001446408,0.0001635744,0.00003825967,0.00005624456,0.0002004871,0.000001031008,0.0001148952,0.00006365161,0.000002434769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001492984,"about_ca_system_score_gemma":0.00002070588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001513381,"about_ca_topic_score_gemma":0.0001603051,"domain_scores_codex":[0.9990287,0.00007046004,0.000186861,0.0004227347,0.00003659446,0.0002545811],"domain_scores_gemma":[0.9997015,0.000007141101,0.00005198136,0.0001635809,0.00003321752,0.00004258718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002044444,0.0000255934,0.2596442,0.000004651969,0.00002521767,0.000002972374,0.00001811211,0.00003523918,0.738932,0.0001958631,0.0008712542,0.0002244698],"study_design_scores_gemma":[0.001584961,0.0005094403,0.3704995,0.00001104991,0.00003909448,0.00003893524,0.00007383107,0.0002932329,0.6139492,0.006062321,0.006420675,0.0005177504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828177,0.01235125,0.003842603,0.000505913,0.00004786352,0.0001744728,0.00008068168,0.000002886587,0.000176608],"genre_scores_gemma":[0.9977619,0.0007298947,0.0007633092,0.0003613633,0.00006432831,0.00003117186,0.0001779615,0.00001200108,0.00009807395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1249828,"threshold_uncertainty_score":0.6670371,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00450563757263591,"score_gpt":0.2303267784783911,"score_spread":0.2258211409057552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}