{"id":"W2145365757","doi":"10.1093/molbev/msl115","title":"Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?","year":2006,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Gene duplication; Genome; Horizontal gene transfer; Adaptation (eye); Genetics; Comparative genomics; Genome evolution; Genomics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002699714,0.00020816,0.0002836272,0.0003446215,0.0002080042,0.0003579313,0.0002151395,0.0004237635,0.0005273869],"category_scores_gemma":[0.0007736422,0.0001351418,0.0001567075,0.0003759452,0.0006698374,0.0005755625,0.0003081141,0.0003089142,0.0001893995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002862198,"about_ca_system_score_gemma":0.0002228573,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006549825,"about_ca_topic_score_gemma":0.0009126876,"domain_scores_codex":[0.9998198,0.00005606587,0.000009018084,0.00003541916,0.00004363521,0.00003610217],"domain_scores_gemma":[0.999669,0.0001075075,0.0001066594,0.00004283127,0.00003310499,0.00004095135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003852714,0.00004242125,0.06919482,0.0001346839,0.00001981006,0.0003760688,0.000285847,0.001793197,0.9108633,0.001545823,0.00004890667,0.01530979],"study_design_scores_gemma":[0.00003536918,0.000942928,0.7206126,0.00004870498,0.00008117346,0.003440459,0.001276744,0.02013759,0.2447582,0.00525199,0.003347661,0.00006666628],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997344,0.0007296851,0.001207335,0.00009068543,0.000002413736,0.00000262943,0.00003496274,0.0000230697,0.000565293],"genre_scores_gemma":[0.9989374,0.0002472841,0.0005980711,0.00002229315,0.000001859486,0.000002314027,0.00003275931,0.000006607671,0.0001513875],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006549825,"threshold_uncertainty_score":0.002076685,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00450563757263591,"score_gpt":0.2303267784783911,"score_spread":0.2258211409057552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}