{"id":"W2145481313","doi":"10.1093/bioinformatics/btp044","title":"Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree","year":2009,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canada Research Chairs; Genome Atlantic; Auckland University of Technology, New Zealand","keywords":"Phylogenetic tree; Character (mathematics); Tree (set theory); Character evolution; Phylogenetics; Computer science; Java; Biology; Evolutionary biology; Combinatorics; Mathematics; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001569393,0.001560336,0.000981637,0.005297782,0.0007616433,0.002738114,0.00191491,0.001238806,0.02897822],"category_scores_gemma":[0.006154272,0.0008798271,0.001277768,0.003437839,0.0004859554,0.002912537,0.002440419,0.001549736,0.004942509],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006179565,"about_ca_system_score_gemma":0.0008123275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003868397,"about_ca_topic_score_gemma":0.005318788,"domain_scores_codex":[0.9995134,0.0001492575,0.00004751118,0.0001281075,0.0001161413,0.00004547774],"domain_scores_gemma":[0.9982074,0.001156124,0.0001464439,0.0001750131,0.000218094,0.0000967802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001704024,0.0003769181,0.0112013,0.004419045,0.0005423777,0.001494559,0.005624638,0.08679058,0.05470299,0.06230843,0.1790219,0.5918132],"study_design_scores_gemma":[0.0004079066,0.000177089,0.01032605,0.0006003986,0.0001531965,0.001342021,0.001179078,0.7187775,0.02194709,0.0703124,0.174469,0.0003083131],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03841253,0.0009014286,0.8177869,0.000808602,0.0001162053,0.0002586212,0.02144543,0.1123144,0.007955888],"genre_scores_gemma":[0.1259463,0.0006817629,0.8463904,0.0001412925,0.0000290287,0.0004868514,0.01260822,0.01110587,0.00261031],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02897822,"threshold_uncertainty_score":0.09694183,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03208165806107003,"score_gpt":0.2389265120745764,"score_spread":0.2068448540135063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}