{"id":"W2145541031","doi":"10.1093/nar/gki582","title":"CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome","year":2005,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Public Health Service; National Cancer Institute; U.S. Department of Health and Human Services; National Institutes of Health; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre; Genome Canada","keywords":"Biology; CpG site; Genetics; Genome; Chromatin; DNA methylation; Gene; Epigenetics; DNA microarray; Human genome; Genomic library; Computational biology; Genomics; Gene expression; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002563628,0.0001777793,0.0002165476,0.00006961591,0.000248322,0.00007870391,0.0006508445,0.0001387158,0.000254639],"category_scores_gemma":[0.00006703575,0.0001271192,0.0001063247,0.000209637,0.0004640985,0.00001152055,0.0003551031,0.0003488854,0.00003483313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002423881,"about_ca_system_score_gemma":0.00009443314,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000541271,"about_ca_topic_score_gemma":0.00005069414,"domain_scores_codex":[0.9982545,0.0002981918,0.0002389086,0.0004793133,0.0003487409,0.0003803043],"domain_scores_gemma":[0.9989588,0.00008390135,0.000118928,0.0006172291,0.0001379365,0.00008326555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001075073,0.0001673606,0.003093297,0.00001360804,0.00009983942,0.000005988023,0.001403595,0.00006359535,0.9919557,0.0001999005,0.002723488,0.0001661488],"study_design_scores_gemma":[0.001004594,0.0008379404,0.05213935,0.00005917058,0.00001749985,0.000005519687,0.002902719,0.001559933,0.9322482,0.003065713,0.005816163,0.000343133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942724,0.0001390395,0.00005997705,0.001054993,0.00001781901,0.0003495429,0.0003421864,0.00001287742,0.003751182],"genre_scores_gemma":[0.9975074,0.00008795707,0.0004368543,0.0001424117,0.0003716631,0.00007496597,0.0003365541,0.0000403905,0.001001831],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05970741,"threshold_uncertainty_score":0.5183769,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02610790895211713,"score_gpt":0.3064735732717055,"score_spread":0.2803656643195884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}