{"id":"W2145541031","doi":"10.1093/nar/gki582","title":"CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome","year":2005,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Public Health Service; National Cancer Institute; U.S. Department of Health and Human Services; National Institutes of Health; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre; Genome Canada","keywords":"Biology; CpG site; Genetics; Genome; Chromatin; DNA methylation; Gene; Epigenetics; DNA microarray; Human genome; Genomic library; Computational biology; Genomics; Gene expression; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003772549,0.0007874243,0.001022287,0.001372741,0.0006952516,0.0003531606,0.000608723,0.0007311821,0.01933926],"category_scores_gemma":[0.0005347436,0.0004349984,0.0005039311,0.001635252,0.0003784259,0.0003569924,0.0003430538,0.00144879,0.006881522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003104284,"about_ca_system_score_gemma":0.0004373955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005563418,"about_ca_topic_score_gemma":0.002107673,"domain_scores_codex":[0.9996082,0.00006341836,0.00002138783,0.0001424869,0.0001002521,0.00006431773],"domain_scores_gemma":[0.9996972,0.00016285,0.00002485331,0.00003467,0.00003307017,0.00004736528],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000858887,0.00005154853,0.0002221724,0.0001900744,0.00001423406,0.00004855401,0.00001846627,0.00006638814,0.9917611,0.0002294357,0.0008850038,0.006427187],"study_design_scores_gemma":[0.0002141362,0.00113526,0.02524256,0.00006995782,0.0002428519,0.001315863,0.00008370491,0.002512438,0.8943332,0.00145945,0.07334641,0.00004421168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4313,0.01034363,0.4508749,0.002074781,0.0006840465,0.002617938,0.06017124,0.009901261,0.03203238],"genre_scores_gemma":[0.2977742,0.006969507,0.5189785,0.00156347,0.0002948184,0.00489064,0.1314976,0.0009776979,0.03705355],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01933926,"threshold_uncertainty_score":0.06469625,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02610790895211713,"score_gpt":0.3064735732717055,"score_spread":0.2803656643195884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}