{"id":"W2145608020","doi":"10.1371/journal.pgen.1003088","title":"The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry","year":2012,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":300,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Northern British Columbia; University of British Columbia","funders":"Office of Science; Koninklijke Nederlandse Akademie van Wetenschappen; Wageningen University and Research; Joint Genome Institute; Massey University; Royal Society Te Apārangi; Bio-Protection Research Centre; U.S. Department of Energy","keywords":"Biology; Gene; Cladosporium; Genome; Genetics; Adaptation (eye); Virulence; Host (biology); Host adaptation; Microbiology; Aspergillus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009207205,0.0001635158,0.0001814599,0.00001822045,0.0001219717,0.00001427132,0.0001617592,0.000115623,0.000001210999],"category_scores_gemma":[0.00003865623,0.0001016738,0.0000591607,0.00004297288,0.0001433524,0.000003333423,0.0001765085,0.00007825459,2.434676e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005366405,"about_ca_system_score_gemma":0.00003142534,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004041898,"about_ca_topic_score_gemma":0.00004350606,"domain_scores_codex":[0.9990698,0.00008165967,0.0002389559,0.0001824527,0.000179745,0.0002474186],"domain_scores_gemma":[0.9993197,0.00005141762,0.0001589929,0.0002802543,0.00005774842,0.0001319224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008785067,0.00008572907,0.2164256,0.00005066639,0.00005161812,9.627623e-7,0.0001455294,0.000029869,0.7822197,0.00003594509,0.0001402076,0.0007263196],"study_design_scores_gemma":[0.0001669767,0.0002428835,0.6443602,0.00003700238,0.00009816951,0.000013711,0.0002832985,0.0001510152,0.3536498,0.00001699258,0.0008388096,0.0001410642],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9768512,0.02062569,0.00001140288,0.00007767008,0.0001174326,0.0002381317,0.002044334,0.000003931693,0.00003020828],"genre_scores_gemma":[0.9976255,0.001824735,0.0001485555,0.00008499078,0.0001500746,0.00001128649,0.00008823405,0.0000148375,0.00005174792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4285699,"threshold_uncertainty_score":0.4146136,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01507521726430267,"score_gpt":0.2213786769030158,"score_spread":0.2063034596387132,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}