{"id":"W2145608020","doi":"10.1371/journal.pgen.1003088","title":"The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry","year":2012,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":300,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Northern British Columbia; University of British Columbia","funders":"Office of Science; Koninklijke Nederlandse Akademie van Wetenschappen; Wageningen University and Research; Joint Genome Institute; Massey University; Royal Society Te Apārangi; Bio-Protection Research Centre; U.S. Department of Energy","keywords":"Biology; Gene; Cladosporium; Genome; Genetics; Adaptation (eye); Virulence; Host (biology); Host adaptation; Microbiology; Aspergillus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001281252,0.000366863,0.0002242696,0.0004743351,0.0002406461,0.0003291671,0.0001468387,0.0004111622,0.0004606968],"category_scores_gemma":[0.0003582134,0.0001807564,0.0002652887,0.0004700961,0.0001603934,0.0003432205,0.0003338025,0.0003142015,0.0002095072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000219644,"about_ca_system_score_gemma":0.0001932367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001405661,"about_ca_topic_score_gemma":0.002536902,"domain_scores_codex":[0.9998507,0.00001381111,0.000009474636,0.00006831146,0.00002810671,0.0000296124],"domain_scores_gemma":[0.9996607,0.00006199756,0.0001530745,0.00003196887,0.00003621805,0.00005598637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003709747,0.00002806588,0.02376399,0.0001372535,0.00004202217,0.0002001117,0.0002322913,0.0002083998,0.9678304,0.00008846085,0.00006907437,0.007029045],"study_design_scores_gemma":[0.00003063258,0.0003623588,0.9146458,0.00004669539,0.0001272519,0.001826356,0.0005265874,0.001582766,0.07369898,0.0002326998,0.006891661,0.0000282126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971042,0.0006089775,0.0005053721,0.00003687393,0.000004117377,0.000007864258,0.00138703,0.00001649631,0.0003290724],"genre_scores_gemma":[0.9909898,0.0003781491,0.00256172,0.00007131571,0.000004900291,0.00001517713,0.005450111,0.00001462457,0.0005142307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001405661,"threshold_uncertainty_score":0.002794921,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01507521726430267,"score_gpt":0.2213786769030158,"score_spread":0.2063034596387132,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}