{"id":"W2145801816","doi":"10.1128/jb.00804-08","title":"Aromatic Amino Acid-Dependent Expression of Indole-3-Pyruvate Decarboxylase Is Regulated by TyrR in<i>Enterobacter cloacae</i>UW5","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"GABA and Rice Research","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Biochemistry; Aromatic amino acids; Carboxy-lyases; Tryptophan; Indole-3-acetic acid; Lysine decarboxylase; Amino acid; Enzyme; Gene; Auxin","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003884494,0.0001632565,0.0005027052,0.00007047809,0.00007534124,0.00001420223,0.0003966734,0.0002170653,0.0003761707],"category_scores_gemma":[0.00006335679,0.00006080355,0.0001629892,0.000227864,0.0001462683,0.0001858561,0.0001083836,0.0003585466,0.00001506926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004530601,"about_ca_system_score_gemma":0.00002771772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008213324,"about_ca_topic_score_gemma":0.00002938554,"domain_scores_codex":[0.9980734,0.0003006351,0.0007792404,0.0001922945,0.0002975648,0.0003568918],"domain_scores_gemma":[0.9989543,0.0001540873,0.0005387583,0.00007555735,0.0001184372,0.0001588846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002208229,0.0001963411,0.04451262,0.00001076012,0.00001914752,0.00007578309,0.0001896028,0.000001299,0.9515215,5.571958e-7,0.000903553,0.002348079],"study_design_scores_gemma":[0.0006547523,0.0008552764,0.7005923,0.0001127178,0.000008701602,0.000357059,0.0001176969,0.00001112702,0.2964209,0.00006724295,0.000686572,0.0001156124],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985657,0.0003806938,0.000002263077,0.000688287,0.0001582871,0.0001081295,0.00001958434,0.000006768846,0.00007031239],"genre_scores_gemma":[0.9988215,0.000643119,0.00006565294,0.000152108,0.0001109289,0.000002582246,0.00001514338,0.000001905639,0.0001870801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6560798,"threshold_uncertainty_score":0.4118805,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02169611188676097,"score_gpt":0.24107662251698,"score_spread":0.2193805106302191,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}