{"id":"W2145923576","doi":"10.1371/journal.ppat.0030136","title":"Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in Leishmania","year":2007,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier de l'Université Laval; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Fonds Québécois de la Recherche sur la Nature et les Technologies; Centre National de la Recherche Scientifique; Deutscher Akademischer Austauschdienst; Canadian Institutes of Health Research; Université Laval","keywords":"Retroposon; Biology; Retrotransposon; Trypanosoma brucei; Genetics; Pentatricopeptide repeat; Long terminal repeat; Gene; Leishmania; Genome; Untranslated region; Gene expression; Messenger RNA; Transposable element; RNA editing; Parasite hosting","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009642783,0.0003174368,0.0001907522,0.0004391563,0.0002218682,0.0002603073,0.0001684475,0.000243725,0.001642292],"category_scores_gemma":[0.0002350343,0.0001237655,0.0002451679,0.0004138771,0.0002116229,0.0002484899,0.0002068457,0.0002844466,0.0009442492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001661024,"about_ca_system_score_gemma":0.0001430779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002265017,"about_ca_topic_score_gemma":0.0003857205,"domain_scores_codex":[0.999884,0.00001275068,0.000008745157,0.00003728512,0.00004176858,0.00001551207],"domain_scores_gemma":[0.9997863,0.00005456045,0.0000705469,0.00002461477,0.00002897736,0.00003495637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001810785,0.00001972441,0.003906097,0.00009657187,0.00001227458,0.0002456269,0.00005848611,0.00004645449,0.981786,0.0002365992,0.00008958753,0.01332156],"study_design_scores_gemma":[0.00006786264,0.00129506,0.2032249,0.00009214745,0.0001688549,0.01045166,0.0004334697,0.001909402,0.7353226,0.001237329,0.04575243,0.00004434932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9745511,0.006579731,0.01304804,0.0001123379,0.00003449205,0.00009744626,0.001960403,0.0003435524,0.003272747],"genre_scores_gemma":[0.9799484,0.001774764,0.009048872,0.0001123073,0.0000307166,0.00006855,0.004067019,0.00003744763,0.004912035],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001642292,"threshold_uncertainty_score":0.005493999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03182899826800289,"score_gpt":0.3084041279645123,"score_spread":0.2765751296965094,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}