{"id":"W2145923576","doi":"10.1371/journal.ppat.0030136","title":"Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in Leishmania","year":2007,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier de l'Université Laval; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Fonds Québécois de la Recherche sur la Nature et les Technologies; Centre National de la Recherche Scientifique; Deutscher Akademischer Austauschdienst; Canadian Institutes of Health Research; Université Laval","keywords":"Retroposon; Biology; Retrotransposon; Trypanosoma brucei; Genetics; Pentatricopeptide repeat; Long terminal repeat; Gene; Leishmania; Genome; Untranslated region; Gene expression; Messenger RNA; Transposable element; RNA editing; Parasite hosting","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008703607,0.0001095485,0.0003153651,0.000268288,0.00003816587,0.000003778952,0.00011499,0.0001044506,0.0001715632],"category_scores_gemma":[0.0002239136,0.0000971765,0.000106572,0.0003087483,0.00007823408,0.00008665714,0.00003879119,0.0001625474,0.00001005503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007011608,"about_ca_system_score_gemma":0.00009557329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003131478,"about_ca_topic_score_gemma":0.0002024661,"domain_scores_codex":[0.9984615,0.0000346967,0.0004440736,0.0002157511,0.0004932965,0.0003506741],"domain_scores_gemma":[0.9990138,0.00005806405,0.0001355367,0.0003316025,0.0003018729,0.0001590887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002689692,0.0005943724,0.1795457,0.0001261897,0.00001280748,0.00006131528,0.000232492,3.53238e-7,0.8186474,0.00004185955,0.00006886955,0.0003996916],"study_design_scores_gemma":[0.0006824808,0.0001808438,0.5840793,0.0001530368,0.0000143155,0.00001234726,0.0005422545,0.00003171786,0.4140663,0.000008526965,0.0001808199,0.00004816408],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975922,0.0003301753,0.0001623092,0.00009465448,0.00003187952,0.000358617,0.0004908795,0.00001634427,0.0009229884],"genre_scores_gemma":[0.9966208,0.00009865654,0.002937526,0.0000762148,0.00005031891,0.00001308117,0.00006355476,0.00001903947,0.0001208002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4045811,"threshold_uncertainty_score":0.3962743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03182899826800289,"score_gpt":0.3084041279645123,"score_spread":0.2765751296965094,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}