{"id":"W2145972251","doi":"10.1093/nar/29.3.753","title":"Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching","year":2001,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"Medical Research Council Canada","keywords":"Biology; Pseudoknot; Genetics; Translation (biology); RNA; GenBank; Messenger RNA; Gene; Homology (biology); Sequence (biology); Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002579349,0.0002335964,0.000288111,0.0006841753,0.0004177988,0.0004729295,0.0001908075,0.0003203441,0.0007243728],"category_scores_gemma":[0.0008748178,0.0001464823,0.0002412864,0.0005576759,0.0004396648,0.0003335251,0.0002318336,0.0003228293,0.0004671065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001819277,"about_ca_system_score_gemma":0.0002156585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003186289,"about_ca_topic_score_gemma":0.0005307224,"domain_scores_codex":[0.999739,0.00005789367,0.00002395699,0.00006279074,0.0000766044,0.00003968991],"domain_scores_gemma":[0.9994847,0.0001208515,0.0001566457,0.00005904572,0.0001072001,0.00007150218],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004642175,0.00003565861,0.003557701,0.000160343,0.00001767416,0.001091332,0.0001668477,0.0002615109,0.985171,0.001027865,0.00008339169,0.007962515],"study_design_scores_gemma":[0.0001213597,0.001715787,0.1163493,0.0001298992,0.0002020623,0.02176139,0.0006052929,0.009104407,0.8267502,0.004700997,0.01847744,0.00008196569],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861026,0.001515686,0.01031914,0.00007929753,0.00003192214,0.00004165556,0.0003021461,0.00006885522,0.001538721],"genre_scores_gemma":[0.973951,0.0009314999,0.02278675,0.00007249117,0.00002485677,0.00005390365,0.001276565,0.0000219887,0.0008809278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007243728,"threshold_uncertainty_score":0.002423286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06232609551585684,"score_gpt":0.3830907109204091,"score_spread":0.3207646154045523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}