{"id":"W2145989523","doi":"10.1186/1477-5956-8-21","title":"Localization of proteins in the cell wall of Mycobacterium avium subsp. paratuberculosis K10 by proteomic analysis","year":2010,"lang":"en","type":"article","venue":"Proteome Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Paratuberculosis; Proteome; Proteomics; Biology; Mycobacterium; Microbiology; Pathogen; Polyacrylamide gel electrophoresis; Cell wall; Cell; Mycobacterium avium subspecies paratuberculosis; Gel electrophoresis; Computational biology; Bacteria; Biochemistry; Enzyme; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002123233,0.0001639609,0.0004045219,0.0006287991,0.00009988611,0.00005461503,0.0006424091,0.0001026534,0.0003277154],"category_scores_gemma":[0.0006484063,0.00009862872,0.0001338992,0.00464747,0.0007896082,0.0003070508,0.00009656982,0.0003723385,0.00001776185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004875361,"about_ca_system_score_gemma":0.0004119502,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009444143,"about_ca_topic_score_gemma":0.0001210183,"domain_scores_codex":[0.9973229,0.000108075,0.0004976896,0.0004477493,0.001137865,0.0004857648],"domain_scores_gemma":[0.9982853,0.00006976315,0.0002445003,0.0007613675,0.0004492909,0.0001897602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000721271,0.0003816539,0.1964806,0.0002090437,0.00001634807,0.000002489681,0.0004201597,0.00001391301,0.8021057,0.00002923861,0.00009162595,0.0001771134],"study_design_scores_gemma":[0.0004780783,0.0003593193,0.1220579,0.00004320487,0.0001054767,0.000003764027,0.00005627967,0.001760105,0.8746242,0.00008032699,0.0003201213,0.0001111725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945362,0.00003555519,0.000751436,0.001081033,0.00003811553,0.002694088,0.00004097615,0.00001401739,0.0008086193],"genre_scores_gemma":[0.9977306,0.00003792002,0.001421471,0.0001021037,0.00002795589,0.0005329627,0.00002979826,0.00001004091,0.0001071645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07442264,"threshold_uncertainty_score":0.4021963,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008826566323913763,"score_gpt":0.2744229169005016,"score_spread":0.2655963505765879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}