{"id":"W2146143354","doi":"10.1093/molbev/msm101","title":"Plastid Genome Sequence of the Cryptophyte Alga Rhodomonas salina CCMP1319: Lateral Transfer of Putative DNA Replication Machinery and a Test of Chromist Plastid Phylogeny","year":2007,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"ca_institutions":"Atlantic School of Theology; Dalhousie University; Canadian Institute for Advanced Research","funders":"Genome Atlantic; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Plastid; Biology; Haptophyte; Genome; Algae; Phylogenetic tree; Genetics; Gene; Botany; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002701895,0.0001284736,0.0001857828,0.00004659257,0.00007169104,0.000002019935,0.0001307414,0.0002043849,0.0000021664],"category_scores_gemma":[0.0001309206,0.0001077194,0.00007249726,0.0001003163,0.000603279,0.000004741151,0.00009080355,0.00008223893,2.696819e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001224619,"about_ca_system_score_gemma":0.00004293541,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007007983,"about_ca_topic_score_gemma":0.00001394725,"domain_scores_codex":[0.9991357,0.00009326266,0.0002503861,0.0003036259,0.00006247775,0.0001544975],"domain_scores_gemma":[0.9994546,0.00003915818,0.000129439,0.0002395882,0.00009637934,0.00004080179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002519063,0.00005216764,0.08958279,0.00005367374,0.00005913387,0.000001174492,0.00008380122,0.000022384,0.9089425,0.0007741315,0.00000423531,0.0001720994],"study_design_scores_gemma":[0.0003813889,0.0003408042,0.4367457,0.00001092534,0.00002897115,0.00001731511,0.00001202877,0.00003132341,0.5618228,0.000495427,0.00003906402,0.00007426494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9830588,0.001015779,0.0151432,0.00003966255,0.00005237535,0.0002108908,0.0003999804,0.000003380313,0.0000759933],"genre_scores_gemma":[0.9992657,0.00006658443,0.0003978338,0.00003995724,0.00002433517,0.000004491116,0.000175812,0.000006869424,0.00001841257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.347163,"threshold_uncertainty_score":0.439267,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007687731901773302,"score_gpt":0.2465851485819642,"score_spread":0.2388974166801909,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}