{"id":"W2146143354","doi":"10.1093/molbev/msm101","title":"Plastid Genome Sequence of the Cryptophyte Alga Rhodomonas salina CCMP1319: Lateral Transfer of Putative DNA Replication Machinery and a Test of Chromist Plastid Phylogeny","year":2007,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"ca_institutions":"Atlantic School of Theology; Dalhousie University; Canadian Institute for Advanced Research","funders":"Genome Atlantic; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Plastid; Biology; Haptophyte; Genome; Algae; Phylogenetic tree; Genetics; Gene; Botany; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001001895,0.0004578775,0.0003444841,0.0003763095,0.0002721624,0.0002209887,0.0002825347,0.0003390688,0.002604966],"category_scores_gemma":[0.0002626166,0.0001129736,0.0004912302,0.0007105153,0.0001125049,0.0001581161,0.0002586978,0.0004592588,0.001666324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004586306,"about_ca_system_score_gemma":0.0005379387,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005135088,"about_ca_topic_score_gemma":0.004645006,"domain_scores_codex":[0.9998747,0.000009505445,0.00001327015,0.00004529784,0.00004319326,0.0000141409],"domain_scores_gemma":[0.9998115,0.00002718877,0.00004957124,0.00001915452,0.00003965393,0.0000529612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002721765,0.00002523874,0.001404321,0.0001609431,0.00001515728,0.0001680781,0.00007000759,0.0001034522,0.9940318,0.00006237891,0.000199839,0.0034866],"study_design_scores_gemma":[0.0002524683,0.0008284701,0.562049,0.00009212516,0.0003368844,0.003658435,0.0005606855,0.003977781,0.3820482,0.0003656961,0.04571962,0.0001106328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9329142,0.0008331093,0.00387483,0.0002718841,0.00004405546,0.0001315874,0.05929464,0.0004009391,0.002234751],"genre_scores_gemma":[0.7465333,0.0007992852,0.01381633,0.0001601384,0.00002933912,0.0001173226,0.2332132,0.0002043351,0.005126736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005135088,"threshold_uncertainty_score":0.01021039,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007687731901773302,"score_gpt":0.2465851485819642,"score_spread":0.2388974166801909,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}