{"id":"W2146264981","doi":"10.1128/jcm.01309-07","title":"Novel Multiplex PCR Assay for Simultaneous Identification of Community-Associated Methicillin-Resistant <i>Staphylococcus aureus</i> Strains USA300 and USA400 and Detection of <i>mecA</i> and Panton-Valentine Leukocidin Genes, with Discrimination of <i>Staphylococcus aureus</i> from Coagulase-Negative Staphylococci","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Staphylococcus aureus; Leukocidin; Panton–Valentine leukocidin; Microbiology; Multiplex; Biology; Multiplex polymerase chain reaction; Staphylococcal infections; Micrococcaceae; Coagulase; Methicillin-resistant Staphylococcus aureus; Virology; Polymerase chain reaction; Bacteria; Gene; Staphylococcus; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.006998851,0.0005034826,0.002347641,0.0004448147,0.0002207802,0.0000253597,0.0003142615,0.0007796563,0.000005225935],"category_scores_gemma":[0.005855071,0.0004090361,0.0004037195,0.0004461986,0.002288959,0.0001903937,0.0001390601,0.001207603,1.652373e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001113872,"about_ca_system_score_gemma":0.0003296545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005320023,"about_ca_topic_score_gemma":0.002695784,"domain_scores_codex":[0.9935064,0.0009190522,0.004236621,0.0005012136,0.0003331094,0.0005035671],"domain_scores_gemma":[0.979642,0.01092997,0.006003478,0.000481461,0.002650525,0.0002925498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.008520569,0.00134529,0.01206156,0.0006264747,0.001033299,0.00001312241,0.0009380375,0.0000708994,0.9687067,0.00004431004,0.00004781679,0.006591914],"study_design_scores_gemma":[0.01296031,0.005177752,0.126135,0.0008719018,0.001509837,0.00002763814,0.002754182,0.0003039553,0.8491277,0.0003058632,0.0004122397,0.0004136242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9590419,0.001559357,0.03567111,0.0002044922,0.0002250722,0.001252405,0.002015037,0.0000165424,0.00001406103],"genre_scores_gemma":[0.9913249,0.001005182,0.007134621,0.0001828891,0.0001313146,0.000007961518,0.0001278198,0.00005980743,0.00002548604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.119579,"threshold_uncertainty_score":0.9998361,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04893954469295651,"score_gpt":0.3427170446724739,"score_spread":0.2937774999795174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}