{"id":"W2146823241","doi":"10.3382/ps.2014-04309","title":"Endogenous avian leukosis viral loci in the Red Jungle Fowl genome assembly","year":2014,"lang":"en","type":"article","venue":"Poultry Science","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Genome; Biology; Endogenous retrovirus; Provirus; Genetics; Retrotransposon; Virology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007866994,0.0001058137,0.0001403421,0.0001418265,0.000316247,0.00005926811,0.0002526753,0.00004243879,0.00005668802],"category_scores_gemma":[0.0001938201,0.00006742477,0.00005038648,0.0007408211,0.000201,0.0001611275,0.0000372424,0.0001481755,0.0002340976],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001571285,"about_ca_system_score_gemma":0.0001380885,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003992558,"about_ca_topic_score_gemma":0.00003770332,"domain_scores_codex":[0.9987623,0.00005934486,0.0001595599,0.0002890989,0.0003640956,0.0003655825],"domain_scores_gemma":[0.9993168,0.00006205518,0.00004113486,0.0004154581,0.0000564541,0.0001081164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004936507,0.001474002,0.7227038,0.00003935385,0.00004496195,0.000166949,0.004189165,0.00007510983,0.1687016,0.002580932,0.0002833416,0.09969138],"study_design_scores_gemma":[0.001662777,0.0005477362,0.9352344,0.00003306841,0.00005376672,0.000269695,0.0006368736,0.0004795429,0.006498929,0.0004539719,0.05390795,0.0002212408],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9068833,0.00004485415,0.0001965414,0.0007617466,0.0001215264,0.0002408155,0.000002315121,0.00003400014,0.09171491],"genre_scores_gemma":[0.9981809,0.00001009873,0.0004247097,0.0008098854,0.00007729357,0.00001882194,0.000004314699,0.000007277899,0.0004666669],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2125306,"threshold_uncertainty_score":0.3008929,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03147072099060578,"score_gpt":0.2818841518306259,"score_spread":0.2504134308400201,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}