{"id":"W2146823241","doi":"10.3382/ps.2014-04309","title":"Endogenous avian leukosis viral loci in the Red Jungle Fowl genome assembly","year":2014,"lang":"en","type":"article","venue":"Poultry Science","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Genome; Biology; Endogenous retrovirus; Provirus; Genetics; Retrotransposon; Virology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003095649,0.0004015099,0.0004614985,0.00128568,0.0004479297,0.0005261761,0.0004295615,0.0003286842,0.002475875],"category_scores_gemma":[0.0004960913,0.0004063685,0.0005840203,0.0007999334,0.0001377311,0.0002653373,0.0003439563,0.0007225409,0.001669105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000549837,"about_ca_system_score_gemma":0.0004944667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002434442,"about_ca_topic_score_gemma":0.0064467,"domain_scores_codex":[0.9998074,0.00002131442,0.00001732028,0.00008772523,0.00003924745,0.00002708938],"domain_scores_gemma":[0.9998206,0.0000370811,0.00003081436,0.00003648045,0.00004958229,0.00002539865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004115578,0.00007926016,0.003966581,0.0004791423,0.00004251275,0.000566349,0.000433854,0.001061342,0.9494889,0.001182861,0.001729533,0.0405581],"study_design_scores_gemma":[0.0001785138,0.0009465771,0.1097842,0.0003696374,0.0006171006,0.00250464,0.0007461548,0.01799007,0.565693,0.00185986,0.2991787,0.0001315635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.785919,0.003505549,0.1439754,0.0002711631,0.0002315153,0.0005036987,0.05501865,0.002495844,0.008079184],"genre_scores_gemma":[0.411422,0.002084079,0.3304281,0.0001967676,0.00006348449,0.0005396632,0.2447141,0.001152765,0.009399157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002475875,"threshold_uncertainty_score":0.008282661,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03147072099060578,"score_gpt":0.2818841518306259,"score_spread":0.2504134308400201,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}