{"id":"W2146862880","doi":"10.1128/jb.186.2.400-410.2004","title":"Complete Sequence and Evolutionary Genomic Analysis of the <i>Pseudomonas aeruginosa</i> Transposable Bacteriophage D3112","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Prophage; Genetics; Transposable element; Bacteriophage; Genome; Lysogenic cycle; Phylogenetic tree; Gene; Horizontal gene transfer; Temperateness; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002136733,0.000598408,0.0005718422,0.001346909,0.0004651049,0.0005221091,0.0003131512,0.0004727053,0.0008412941],"category_scores_gemma":[0.0008264856,0.0001969824,0.0007646723,0.001641986,0.0002199641,0.0001785656,0.0003812935,0.0005587075,0.0009278392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004153269,"about_ca_system_score_gemma":0.0007623604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006954839,"about_ca_topic_score_gemma":0.00470983,"domain_scores_codex":[0.9996587,0.00004111278,0.00003610049,0.00007552686,0.0001206816,0.00006785244],"domain_scores_gemma":[0.9993595,0.0001370365,0.0001218567,0.00004652676,0.0001872998,0.0001477958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009169069,0.00009532318,0.006430475,0.0003847457,0.00002875357,0.0007357569,0.0003217419,0.0004663161,0.9707415,0.00011292,0.0002851652,0.01948051],"study_design_scores_gemma":[0.0001610239,0.001433263,0.7319599,0.0002501636,0.0002742302,0.004775926,0.0008947925,0.003937555,0.2140103,0.0004054238,0.04177073,0.0001266031],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9757035,0.002046586,0.004812157,0.0001552463,0.00002881716,0.0002566596,0.01466333,0.000101762,0.00223192],"genre_scores_gemma":[0.8947454,0.00220086,0.0191966,0.0002229846,0.00004923021,0.0002894397,0.0803599,0.0001146316,0.00282094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006954839,"threshold_uncertainty_score":0.01382875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01469724160568025,"score_gpt":0.2282592643532333,"score_spread":0.213562022747553,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}