{"id":"W2146960273","doi":"10.1186/1471-2164-12-s1-s4","title":"Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Algal biology and biofuel production","field":"Energy","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biological and Environmental Research; Office of Science; New York University Abu Dhabi; York University; U.S. Department of Energy","keywords":"ORFS; Biology; Genome; Computational biology; UniProt; Genome project; Genetics; Gene; Annotation; Open reading frame; Peptide sequence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001587785,0.00009421004,0.0001634033,0.00007553866,0.0000519771,0.000002855257,0.00006849292,0.0001058649,0.0001444239],"category_scores_gemma":[0.00005610195,0.00008585505,0.00004396137,0.00009757655,0.000139493,0.00009627143,0.00002607674,0.00006042484,0.00001381505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001448122,"about_ca_system_score_gemma":0.00004029066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001626213,"about_ca_topic_score_gemma":0.00007062344,"domain_scores_codex":[0.9992943,0.00005125329,0.0002882994,0.0001984188,0.0000668182,0.0001009513],"domain_scores_gemma":[0.9994264,0.00002313613,0.0002246842,0.0001793092,0.0001193637,0.00002706719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009330928,0.00005198375,0.1558187,0.0001090761,0.0001377579,3.514833e-7,0.001528904,0.0007066381,0.7980184,0.03764756,0.00001581094,0.005031708],"study_design_scores_gemma":[0.0002500308,0.00005484235,0.8591149,0.000001672358,0.00004034001,0.000006173127,0.00009621437,0.00009443564,0.1342946,0.004588967,0.001369244,0.00008857845],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971966,0.0007998807,0.0007422572,0.00001452516,0.0002381399,0.0001068616,0.00001550841,0.00001512618,0.0008711349],"genre_scores_gemma":[0.9961182,0.0001109708,0.003331849,0.00001515586,0.0001182683,0.000005477631,0.0001246755,0.000008687892,0.0001666628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7032962,"threshold_uncertainty_score":0.3501067,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03543050861814765,"score_gpt":0.2176829904145174,"score_spread":0.1822524817963698,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}