{"id":"W2147056018","doi":"10.1128/jb.00805-13","title":"Structural and Functional Studies of gpX of Escherichia coli Phage P2 Reveal a Widespread Role for LysM Domains in the Baseplates of Contractile-Tailed Phages","year":2013,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Escherichia coli; Type VI secretion system; Peptidoglycan; Virulence; Bacteriophage; Fusion protein; Microbiology; Genetics; Gene; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007477867,0.0003447245,0.0001016972,0.0001220081,0.0001437131,0.0001822446,0.0001422414,0.0002514964,0.0003429886],"category_scores_gemma":[0.0001428463,0.0001079342,0.0001548277,0.0001449937,0.0001753113,0.0001481919,0.0001401129,0.0004209244,0.0001269518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001527373,"about_ca_system_score_gemma":0.0001139767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001124341,"about_ca_topic_score_gemma":0.0006762584,"domain_scores_codex":[0.9999566,0.000007734123,0.000001844918,0.00001111857,0.00001478648,0.000007979417],"domain_scores_gemma":[0.9999517,0.000009486687,0.00001225764,0.000004054333,0.000007319231,0.00001517759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009027737,0.00001736389,0.001235215,0.00002215378,0.000005228589,0.0001488837,0.00003600519,0.0002649548,0.9971795,0.00006064289,0.00001977874,0.0009201277],"study_design_scores_gemma":[0.00002701282,0.000544041,0.1333711,0.00001470276,0.00002911652,0.001298225,0.0002658901,0.01063065,0.8507735,0.0001936184,0.002831418,0.0000208008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989452,0.0001764519,0.0005890287,0.000022801,0.000001862678,0.000003078813,0.0000509512,0.000006223693,0.0002044918],"genre_scores_gemma":[0.9979936,0.0001840329,0.0008943281,0.00003379607,0.000004743416,0.000004943439,0.0003462031,0.000006471288,0.0005319416],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001124341,"threshold_uncertainty_score":0.002235532,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01703339186614643,"score_gpt":0.2637749899159207,"score_spread":0.2467415980497742,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}