{"id":"W2147414892","doi":"10.1186/gb-2008-9-11-r161","title":"Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1","year":2008,"lang":"en","type":"article","venue":"Genome biology","topic":"Diatoms and Algae Research","field":"Materials Science","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Los Alamos National Laboratory; U.S. National Library of Medicine; National Nuclear Security Administration; National Institutes of Health; U.S. Department of Energy","keywords":"Thermophile; Biology; Proteome; Genome Biology; Human genetics; Genome; Bacteria; Computational biology; Evolutionary biology; Genetics; Genomics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003301461,0.0001582142,0.0003609931,0.0001001168,0.0001061883,0.000007385144,0.000446494,0.0001603063,0.0004769887],"category_scores_gemma":[0.00005138042,0.00009965216,0.00005412945,0.0002858108,0.0008230112,0.00004776671,0.0003297149,0.0001503598,0.00006736934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003600515,"about_ca_system_score_gemma":0.00009241162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002292393,"about_ca_topic_score_gemma":0.00001955067,"domain_scores_codex":[0.9983978,0.0003006805,0.0003205285,0.0004030863,0.00009245476,0.0004854293],"domain_scores_gemma":[0.9992867,0.00005629853,0.0001205157,0.000413275,0.0000576423,0.00006564451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004607471,0.00005173714,0.003109475,0.00001999389,0.000007490884,0.000004760261,0.0004421882,0.000008096672,0.9959753,0.00009891197,0.00000140238,0.000234544],"study_design_scores_gemma":[0.0004604536,0.0002049176,0.9114653,0.000005194721,0.000002991722,0.00004033928,0.00002652699,0.00001743475,0.08587147,0.0005542265,0.001204626,0.0001464841],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981408,0.0007012392,0.000002149443,0.0001832271,0.0001140267,0.0004726648,0.00006329919,0.00002012827,0.0003024351],"genre_scores_gemma":[0.9993813,0.0001934295,0.00006045067,0.00008122954,0.00007120522,0.00005121246,0.00001040954,0.00001419575,0.0001365469],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9101039,"threshold_uncertainty_score":0.5222692,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01743779605731665,"score_gpt":0.2375822622688524,"score_spread":0.2201444662115357,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}