{"id":"W2147496271","doi":"10.1093/molbev/msr076","title":"“Patchy-Tachy” Leads to False Positives for Recombination","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Recombination; False positive paradox; Biology; Mitochondrial DNA; Evolutionary biology; Genetics; Statistics; Gene; Mathematics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001820122,0.0001316798,0.0001089201,0.00007261835,0.0001091087,0.000006533087,0.0000926666,0.0002266333,0.000006135399],"category_scores_gemma":[0.00009219006,0.0001355581,0.00006424302,0.00007196004,0.00008803438,0.00000349769,0.00006685579,0.00004695466,0.00001024056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001868172,"about_ca_system_score_gemma":0.00002854896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002166821,"about_ca_topic_score_gemma":0.00003988178,"domain_scores_codex":[0.9991457,0.00007546016,0.0001518481,0.0003625104,0.00003534732,0.0002291329],"domain_scores_gemma":[0.9995704,0.000005870644,0.00004768859,0.0001798867,0.0001080171,0.00008818404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002013493,0.00007019282,0.01342116,0.00001078744,0.0000365249,6.54746e-7,0.00007927507,0.00002768818,0.9467113,0.03723578,0.0003793993,0.001825869],"study_design_scores_gemma":[0.003567479,0.007105702,0.376389,0.00004130149,0.0001687532,0.00009680829,0.0002910777,0.002416361,0.5148582,0.07790765,0.015679,0.001478651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6031989,0.0004478803,0.3952036,0.0001719147,0.0001292832,0.000239842,0.00002192913,0.00001429549,0.0005723277],"genre_scores_gemma":[0.9897207,0.00004261807,0.009025494,0.000461635,0.00005044081,0.00004888077,0.0002699508,0.00001508392,0.0003651843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4318531,"threshold_uncertainty_score":0.5527901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009161017117805538,"score_gpt":0.2717129685562112,"score_spread":0.2625519514384057,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}