{"id":"W2147547726","doi":"10.1128/jb.00359-10","title":"Complete Nucleotide Sequence of TOL Plasmid pDK1 Provides Evidence for Evolutionary History of IncP-7 Catabolic Plasmids","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Plasmid; Biology; Genetics; T-DNA Binary system; Transposable element; Gene; Horizontal gene transfer; Homologous recombination; Pseudomonas putida; Nucleic acid sequence; Molecular biology; Mutant; Genome; Recombinant DNA; Vector (molecular biology)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009235392,0.0004153641,0.0003491123,0.0006771755,0.0002552799,0.0003079588,0.0002881597,0.0002968954,0.002007143],"category_scores_gemma":[0.0003826341,0.0002397929,0.0002851917,0.0007206649,0.0002155614,0.0002701284,0.0002623156,0.0006353078,0.002219901],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004155217,"about_ca_system_score_gemma":0.0005100894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007651741,"about_ca_topic_score_gemma":0.001151739,"domain_scores_codex":[0.9998952,0.000007395943,0.00001057024,0.00003516552,0.00003217646,0.00001938758],"domain_scores_gemma":[0.9996426,0.00007430043,0.0001016898,0.00003411956,0.00006644052,0.00008078984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000574578,0.00007446602,0.007188095,0.0004717866,0.00001903388,0.0006522282,0.0001829969,0.0004315684,0.9691459,0.0002485413,0.000260555,0.02075024],"study_design_scores_gemma":[0.0001366866,0.0008824912,0.4222567,0.0002282724,0.0002980367,0.006746157,0.0004641244,0.004167014,0.5078455,0.001101529,0.05571572,0.0001577547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9803002,0.001722865,0.006195167,0.0001142438,0.00003939632,0.00008459124,0.009027766,0.0001657469,0.00235003],"genre_scores_gemma":[0.9240965,0.001720831,0.01255243,0.0001107435,0.00004206697,0.0001098025,0.05814629,0.00009621681,0.003125061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002007143,"threshold_uncertainty_score":0.006714582,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03451057412465858,"score_gpt":0.2708642888577379,"score_spread":0.2363537147330794,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}