{"id":"W2147852901","doi":"10.1186/1471-2164-15-255","title":"Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"SFU Community Trust Endowment Fund; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Simon Fraser University","keywords":"Biology; Genetics; Genome; Caenorhabditis elegans; Indel; Gene; Phenotype; Whole genome sequencing; Genomics; Phenotypic trait; DNA sequencing; Computational biology; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001999326,0.0002682249,0.0001929094,0.0006670124,0.0003137902,0.0002843417,0.0002468014,0.0003224589,0.0008543981],"category_scores_gemma":[0.0004007196,0.0001261588,0.0002524615,0.0004549177,0.0002420495,0.00007890534,0.0003142992,0.0003359706,0.000180752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003076985,"about_ca_system_score_gemma":0.0001864338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004810735,"about_ca_topic_score_gemma":0.01118058,"domain_scores_codex":[0.999773,0.00001944886,0.00002125531,0.00009870137,0.00006416988,0.00002353992],"domain_scores_gemma":[0.9996247,0.00009353939,0.0001290824,0.00004793635,0.00006131445,0.00004336565],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002379182,0.00006238547,0.02749262,0.0001521186,0.0001293371,0.0004697685,0.0002400512,0.0002257474,0.9671543,0.00006707579,0.0001310478,0.003637554],"study_design_scores_gemma":[0.00004414458,0.0003936425,0.9080022,0.00004442543,0.0002329856,0.002189738,0.0004055248,0.001167472,0.08289253,0.00009282024,0.004498948,0.00003559437],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962747,0.0001561343,0.0006647878,0.00001112634,0.000004915517,0.00002348186,0.002453285,0.00002763142,0.0003840193],"genre_scores_gemma":[0.9903807,0.0001243002,0.002698473,0.00003576516,0.000003310711,0.0000562327,0.006194032,0.00003859307,0.0004686331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004810735,"threshold_uncertainty_score":0.009565413,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00627486288472125,"score_gpt":0.2011097398397161,"score_spread":0.1948348769549948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}