{"id":"W2147852901","doi":"10.1186/1471-2164-15-255","title":"Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"SFU Community Trust Endowment Fund; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Simon Fraser University","keywords":"Biology; Genetics; Genome; Caenorhabditis elegans; Indel; Gene; Phenotype; Whole genome sequencing; Genomics; Phenotypic trait; DNA sequencing; Computational biology; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002029989,0.0001425805,0.0001633495,0.00004021022,0.00007670228,0.0000199975,0.0003804984,0.0001195628,0.0000085579],"category_scores_gemma":[0.0001274102,0.0001264054,0.0001067391,0.00008903311,0.00007290172,0.000002921755,0.0001670663,0.0001203483,0.000008593302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002864311,"about_ca_system_score_gemma":0.0001272955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000122298,"about_ca_topic_score_gemma":0.002611657,"domain_scores_codex":[0.9990328,0.00009322425,0.0002853461,0.0002556623,0.00009192499,0.0002410719],"domain_scores_gemma":[0.9991954,0.00002506586,0.0001305088,0.0005451246,0.00005967496,0.00004421865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002527599,0.00007614717,0.07022993,0.0000506066,0.00003762225,4.184602e-7,0.001218901,0.009432347,0.918147,0.0005095567,0.000131993,0.0001402211],"study_design_scores_gemma":[0.001410409,0.0001767566,0.7803699,0.000020551,0.00007529066,0.00002518412,0.0002014128,0.008748412,0.1832618,0.002288574,0.02281376,0.0006079799],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9708333,0.000307661,0.02782659,0.0001507716,0.0002963412,0.0002024065,0.00001578342,0.00000650639,0.0003606258],"genre_scores_gemma":[0.9955552,0.00007164074,0.003432156,0.0003210964,0.0001512137,0.00000882541,0.00003105133,0.00002794957,0.0004009287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7348852,"threshold_uncertainty_score":0.5154664,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00627486288472125,"score_gpt":0.2011097398397161,"score_spread":0.1948348769549948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}