{"id":"W2147894164","doi":"10.1186/1471-2164-14-207","title":"Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote","year":2013,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; RNA splicing; Spliceosome; Intron; Transcriptome; Gene; Encephalitozoon cuniculi; Genetics; Trans-splicing; DNA microarray; Alternative splicing; RNA-Seq; RNA; Gene expression; Messenger RNA; Microsporidia; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000304559,0.00009976492,0.0002924165,0.0003432545,0.00003838683,0.000005810316,0.0001729014,0.0001455659,0.00006353163],"category_scores_gemma":[0.00008647983,0.00008332956,0.0001021791,0.0006644707,0.0001042186,0.0000922024,0.00002284235,0.0001327802,0.000009316616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007207978,"about_ca_system_score_gemma":0.00006632946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002717533,"about_ca_topic_score_gemma":0.003509202,"domain_scores_codex":[0.9989194,0.0002714478,0.0004299464,0.0001723064,0.00002868945,0.0001782226],"domain_scores_gemma":[0.9992808,0.0001576985,0.0001670526,0.000315556,0.00006683795,0.00001211777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001932913,0.0001749902,0.2376165,0.00001211074,0.00008856689,2.180939e-7,0.003112587,0.00568947,0.7519323,0.0004853753,0.000004026547,0.0008645581],"study_design_scores_gemma":[0.0004589302,0.0000525168,0.9058132,0.00002079587,0.0001629588,0.000002639533,0.0004973349,0.001135253,0.09167511,0.00008449416,0.00001767508,0.0000791449],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983985,0.0001929163,0.0003450251,0.00001194979,0.0001635143,0.0003126519,0.00001895218,0.000006685827,0.000549765],"genre_scores_gemma":[0.999568,0.00005158744,0.0002216335,0.0000195007,0.000006962112,0.00002409989,0.00003952538,0.00000664438,0.00006201603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6681967,"threshold_uncertainty_score":0.4108115,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01834127747166625,"score_gpt":0.2636701377086302,"score_spread":0.2453288602369639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}