{"id":"W2147894164","doi":"10.1186/1471-2164-14-207","title":"Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote","year":2013,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; RNA splicing; Spliceosome; Intron; Transcriptome; Gene; Encephalitozoon cuniculi; Genetics; Trans-splicing; DNA microarray; Alternative splicing; RNA-Seq; RNA; Gene expression; Messenger RNA; Microsporidia; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001160798,0.0002118805,0.0003827122,0.0004626554,0.0003440665,0.0003423922,0.0001352356,0.0002544934,0.0005595693],"category_scores_gemma":[0.00018782,0.0001045429,0.0002534568,0.0005120941,0.0001970181,0.0002005778,0.0003393929,0.00039833,0.0001985898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002936658,"about_ca_system_score_gemma":0.0002627333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001547048,"about_ca_topic_score_gemma":0.002980357,"domain_scores_codex":[0.9998995,0.00000671559,0.000005089354,0.0000348519,0.00003412199,0.00001972045],"domain_scores_gemma":[0.9998957,0.00002370909,0.00002361535,0.000007086829,0.00002912808,0.00002076311],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009566382,0.000009296878,0.004354134,0.0001190138,0.00001073822,0.0001125833,0.0001123079,0.0001508947,0.9923228,0.00005071822,0.00006838663,0.002593442],"study_design_scores_gemma":[0.00001472047,0.0004924983,0.7036555,0.00007787834,0.0001370619,0.001500188,0.0008946324,0.005121876,0.2757059,0.0003548016,0.01200025,0.00004467339],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907209,0.001584397,0.002529454,0.00006718707,0.00001205538,0.00002721057,0.003998175,0.00004906196,0.001011516],"genre_scores_gemma":[0.9794179,0.001559047,0.008362533,0.0001227128,0.00001507022,0.00006433158,0.009076864,0.00005053626,0.001330993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001547048,"threshold_uncertainty_score":0.003076077,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01834127747166625,"score_gpt":0.2636701377086302,"score_spread":0.2453288602369639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}