{"id":"W2148002365","doi":"10.1128/aem.68.4.1576-1584.2002","title":"Phylogenetic Diversity of Marine Cyanophage Isolates and Natural Virus Communities as Revealed by Sequences of Viral Capsid Assembly Protein Gene g20","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":168,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of British Columbia; University of Georgia; Woods Hole Oceanographic Institution; National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenetic diversity; Capsid; Genetic diversity; Phylogenetics; Synechococcus; Gene; Genetics; Cyanobacteria; Bacteria; Population","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004891058,0.0001715271,0.0002430591,0.00002366051,0.0001859853,0.000007290637,0.000153974,0.00009517586,0.001223868],"category_scores_gemma":[0.000001139111,0.0001589839,0.00003634884,0.00003063375,0.0009481301,0.00006992219,0.0008829463,0.0001353815,0.00003720373],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004049412,"about_ca_system_score_gemma":0.000001027698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002209482,"about_ca_topic_score_gemma":0.0001431572,"domain_scores_codex":[0.9993048,0.00004767289,0.000212391,0.000211954,0.00002639544,0.0001967364],"domain_scores_gemma":[0.9996459,0.00003176396,0.0001347684,0.0001398595,0.000001177699,0.00004654944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003017881,0.0001158048,0.01068801,0.00001333607,0.00002314729,0.000001144301,0.0004866013,0.000002178116,0.9874467,0.000006700602,0.00008826152,0.001097944],"study_design_scores_gemma":[0.000518053,0.0002485362,0.05876232,0.000007904091,0.00003301508,0.00008779966,0.0004340229,0.00001498244,0.9390934,0.0000666419,0.0005297827,0.0002035136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998538,0.0005620656,0.000002750306,0.000030138,0.0000299018,0.0002244863,0.0002318425,0.000007469632,0.0003733607],"genre_scores_gemma":[0.9985188,0.000521984,0.0003199335,0.0001163563,0.000006586601,0.000008456022,0.000106756,0.000009303699,0.0003917698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04835326,"threshold_uncertainty_score":0.9996892,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005230521825158909,"score_gpt":0.1715922448226927,"score_spread":0.1663617229975338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}