{"id":"W2148184775","doi":"10.1128/jvi.01723-12","title":"HIV-1 Antisense Transcription Is Preferentially Activated in Primary Monocyte-Derived Cells","year":2012,"lang":"en","type":"article","venue":"Journal of Virology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Biology; Monocyte; Transcription (linguistics); Molecular biology; HIV Long Terminal Repeat; clone (Java method); Antisense RNA; Transcription factor; Long terminal repeat; Virology; Gene expression; Gene; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002767346,0.0001655583,0.0004883561,0.0002307441,0.00007584748,0.000004726168,0.0001478893,0.000340957,0.0003761874],"category_scores_gemma":[0.00001482475,0.0001261798,0.0001500195,0.00008825403,0.0001707962,0.0001888589,0.00004169797,0.0005531885,0.0001891434],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006381307,"about_ca_system_score_gemma":0.00004568467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001831589,"about_ca_topic_score_gemma":0.000006457273,"domain_scores_codex":[0.9986012,0.0002999932,0.0005120331,0.00012303,0.00003976178,0.0004239649],"domain_scores_gemma":[0.9993856,0.00007617333,0.0003318845,0.0001111453,0.00006120388,0.00003399261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001124374,0.0003928982,0.007273233,0.00001644604,0.0002549247,0.000008192717,0.001615786,0.000006768644,0.9845089,0.00001571982,0.00316727,0.001615428],"study_design_scores_gemma":[0.002647692,0.0004130577,0.1036585,0.00002008915,0.00009425762,0.0001417124,0.0001575127,4.456571e-7,0.8746282,0.00003579271,0.0180723,0.000130431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923391,0.004393003,0.0001774069,0.0005267491,0.001822788,0.00009509306,0.00001221471,0.00001279864,0.0006208316],"genre_scores_gemma":[0.9972144,0.001453669,0.0001052453,0.0004194629,0.0001139268,0.000001920416,0.000007922999,0.00001382229,0.0006695964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1098807,"threshold_uncertainty_score":0.5145465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01624229436687246,"score_gpt":0.2236738893127865,"score_spread":0.207431594945914,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}