{"id":"W2148264682","doi":"10.1093/nar/gkq857","title":"DAnCER: Disease-Annotated Chromatin Epigenetics Resource","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Biology; Chromatin; Computational biology; Epigenetics; Gene; Function (biology); Genome; Three-domain system; Genetics; Human genome; Protein domain; Domain (mathematical analysis); ChIA-PET; Model organism; Chromatin remodeling","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008562979,0.001719065,0.001793466,0.005546197,0.000746078,0.00156465,0.003200385,0.001359302,0.1355808],"category_scores_gemma":[0.00329478,0.0009371181,0.0008567068,0.004037627,0.0002874627,0.001000648,0.002789844,0.0009920956,0.04751353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007395867,"about_ca_system_score_gemma":0.001244244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005750808,"about_ca_topic_score_gemma":0.01223459,"domain_scores_codex":[0.999498,0.00007383651,0.00008214889,0.000154116,0.0001307651,0.00006122208],"domain_scores_gemma":[0.9986084,0.0004810747,0.000159419,0.0002805127,0.0002143476,0.0002562879],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001321944,0.00009321504,0.00458843,0.005377541,0.0002198793,0.001016104,0.0002448004,0.001591958,0.01593004,0.0026771,0.901423,0.06551606],"study_design_scores_gemma":[0.0006248067,0.00009663661,0.01308771,0.000547283,0.0001961867,0.001600553,0.0001427312,0.004276144,0.01029988,0.005274912,0.9636661,0.0001870096],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.002869884,0.001036358,0.005232608,0.0002894728,0.0001024652,0.0001051261,0.9631357,0.01859429,0.008634097],"genre_scores_gemma":[0.01209144,0.000617941,0.01292864,0.0002434089,0.00005266156,0.0002996083,0.9653614,0.002826055,0.005578776],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.1355808,"threshold_uncertainty_score":0.4535629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01698022823265556,"score_gpt":0.3016239944577466,"score_spread":0.2846437662250911,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}