{"id":"W2148350859","doi":"10.1128/jcm.02220-10","title":"Genotypic and Phenotypic Characterization of Methicillin-Susceptible Staphylococcus aureus Isolates Misidentified as Methicillin-Resistant Staphylococcus aureus by the BD GeneOhm MRSA Assay","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"National Institute on Minority Health and Health Disparities; National Institute of Nursing Research; Ministerio de Economía y Competitividad; Fonds National de la Recherche Luxembourg; Johns Hopkins University","keywords":"SCCmec; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Meticillin; Staphylococcal infections; Biology; Typing; Leukocidin; Multiplex polymerase chain reaction; Micrococcaceae; Polymerase chain reaction; Virology; Antibacterial agent; Antibiotics; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.006470794,0.0006396573,0.002467274,0.0003913866,0.0002500323,0.00005304615,0.0008764332,0.001211292,0.0005658544],"category_scores_gemma":[0.00323645,0.0004313403,0.0009302036,0.0005423704,0.001825172,0.0002042392,0.0002455078,0.002282946,0.00005165458],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001095546,"about_ca_system_score_gemma":0.0008457938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001470261,"about_ca_topic_score_gemma":0.0000936491,"domain_scores_codex":[0.991832,0.001792898,0.004442564,0.0007730094,0.0003418564,0.0008176358],"domain_scores_gemma":[0.9903256,0.002408383,0.004022193,0.000934406,0.001845447,0.0004640187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005263636,0.0007032295,0.006870591,0.000183203,0.001200782,0.00006364445,0.0007665622,0.000003118662,0.9781988,0.0002990634,0.002720229,0.003727129],"study_design_scores_gemma":[0.008891021,0.007878963,0.06506063,0.0008236303,0.002588196,0.0001014851,0.0008322761,0.00005120322,0.8401347,0.00304442,0.06948324,0.00111025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858894,0.004806341,0.004596476,0.001742586,0.001357141,0.0009346778,0.0002706091,0.00003718392,0.0003655441],"genre_scores_gemma":[0.9890856,0.003083726,0.003972559,0.002303535,0.0006230879,0.0000106567,0.00006953564,0.00009471091,0.0007565504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1380641,"threshold_uncertainty_score":0.9998139,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05170269224154893,"score_gpt":0.3323178731499556,"score_spread":0.2806151809084066,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}