{"id":"W2148472139","doi":"10.1099/ijs.0.65567-0","title":"Phylogeny by a polyphasic approach of the order Caulobacterales, proposal of Caulobacter mirabilis sp. nov., Phenylobacterium haematophilum sp. nov. and Phenylobacterium conjunctum sp. nov., and emendation of the genus Phenylobacterium","year":2008,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"European Commission","keywords":"Biology; 16S ribosomal RNA; Microbiology; Strain (injury); Bacteria; Phylogenetics; Gene; Genetics; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004078965,0.0003551915,0.0008367837,0.0001014666,0.0001370803,0.00001857009,0.0005467907,0.0002274969,0.00001300867],"category_scores_gemma":[0.0001353385,0.0002275377,0.0002318126,0.0001319021,0.001066828,0.0000194414,0.0004634347,0.0001694522,4.949345e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000546599,"about_ca_system_score_gemma":0.0002559363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009021554,"about_ca_topic_score_gemma":0.00002564679,"domain_scores_codex":[0.9974095,0.0003204147,0.001391192,0.0003660385,0.0002425912,0.000270249],"domain_scores_gemma":[0.9968038,0.00006668454,0.001670192,0.0003641741,0.001016375,0.00007878103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002731716,0.0002358492,0.03777175,0.001353783,0.0008706237,0.000002673488,0.0004890357,0.00001140121,0.9580429,0.0000930075,0.0008128919,0.00004292336],"study_design_scores_gemma":[0.009241324,0.001674579,0.75561,0.003763914,0.00135744,0.02474178,0.002418182,0.0001950276,0.1921565,0.0004844097,0.006815929,0.001540902],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922292,0.004647649,0.0001766011,0.0005455835,0.000876241,0.0006431554,0.0008081328,0.000002018309,0.0000714748],"genre_scores_gemma":[0.9975021,0.0008488513,0.001062375,0.0001326744,0.0002067879,0.00001430934,0.00008934008,0.00002314785,0.0001203566],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7658864,"threshold_uncertainty_score":0.9278717,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008963939273487473,"score_gpt":0.2051745099402295,"score_spread":0.1962105706667421,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}