{"id":"W2148534612","doi":"10.1107/s0907444909011871","title":"Conservation of a conformational switch in RadA recombinase from<i>Methanococcus maripaludis</i>","year":2009,"lang":"en","type":"article","venue":"Acta Crystallographica Section D Biological Crystallography","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; University of Saskatchewan; Canadian Light Source","keywords":"Methanococcus; Recombinase; ATP hydrolysis; DNA; Homologous recombination; Biology; ATPase; Biophysics; Biochemistry; Chemistry; Stereochemistry; Crystallography; Escherichia coli; Recombination; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005996898,0.0003968149,0.0004798062,0.0005679854,0.0001058732,0.00003675279,0.0004088992,0.0007015184,0.0001278143],"category_scores_gemma":[0.0002137478,0.0003577101,0.0004592677,0.001254688,0.0002879526,0.00003764565,0.0001068832,0.0003259123,3.301964e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002275328,"about_ca_system_score_gemma":0.00006544375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001655498,"about_ca_topic_score_gemma":0.0001934606,"domain_scores_codex":[0.9972885,0.0003067593,0.0008819424,0.000735343,0.0003087199,0.0004787197],"domain_scores_gemma":[0.9985701,0.00009695489,0.0004246253,0.0005233014,0.0002237062,0.0001613056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000613965,0.000457825,0.03902037,0.00001104474,0.00009052367,0.000005992272,0.00003788507,0.00001466841,0.9580124,0.0003132573,0.0007191542,0.0007028916],"study_design_scores_gemma":[0.007440316,0.008512203,0.7451525,0.0001456509,0.0001125272,0.00008487683,0.0007828215,0.0003127747,0.07848959,0.04965104,0.1072998,0.002015895],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953505,0.0002654373,0.001351851,0.0005579164,0.0002635545,0.0006280817,0.0001023411,0.00009298873,0.001387303],"genre_scores_gemma":[0.9952958,0.000479594,0.001892499,0.001130316,0.0001138852,0.00006847546,0.0009792707,0.00001805042,0.00002206574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8795229,"threshold_uncertainty_score":0.9998875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0131744033230398,"score_gpt":0.2306822903858985,"score_spread":0.2175078870628588,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}