{"id":"W2148683465","doi":"10.1093/bioinformatics/btq332","title":"Savant: genome browser for high-throughput sequencing data","year":2010,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Throughput; Computer science; Genome; DNA sequencing; Genome browser; Computational biology; Biology; Genomics; Genetics; DNA; Gene; Operating system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004901134,0.002880279,0.001911859,0.003555431,0.001136549,0.002736144,0.004392518,0.002180994,0.05725955],"category_scores_gemma":[0.01032865,0.002046882,0.001589443,0.004027326,0.0005443852,0.002917647,0.002638483,0.003234552,0.02971314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008836203,"about_ca_system_score_gemma":0.003393574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005618416,"about_ca_topic_score_gemma":0.0103727,"domain_scores_codex":[0.9981805,0.000622624,0.0002045511,0.0003002927,0.0005313805,0.0001606142],"domain_scores_gemma":[0.9949816,0.002646619,0.0004242257,0.0005989023,0.0007551895,0.0005934909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001428009,0.0001026803,0.00170746,0.002751568,0.00025823,0.0007532599,0.0006387348,0.002868993,0.01980238,0.007854022,0.9265075,0.03532726],"study_design_scores_gemma":[0.001192828,0.0002023033,0.006827321,0.001031691,0.0002149521,0.00140348,0.0002686309,0.0436103,0.01909401,0.03880033,0.8869898,0.0003643385],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005509686,0.001844896,0.1846667,0.001313235,0.0006249271,0.0006444913,0.3579852,0.4362772,0.01113382],"genre_scores_gemma":[0.02487545,0.001552944,0.3288311,0.0009138044,0.000151962,0.00235212,0.5796827,0.05505816,0.006581805],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05725955,"threshold_uncertainty_score":0.1915523,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03208935018264604,"score_gpt":0.2600388706498021,"score_spread":0.2279495204671561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}