{"id":"W2148694532","doi":"10.1093/bioinformatics/bts007","title":"CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures","year":2012,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Child and Family Research Institute; Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Workflow; Visualization; Computer science; Genome; Computational biology; Software; Chromatin; Genome browser; Gene; Data mining; Biology; Genomics; Genetics; Database; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000960989,0.001626272,0.001735814,0.003219324,0.0006863562,0.00199384,0.002920334,0.001435055,0.09203953],"category_scores_gemma":[0.00230634,0.001270317,0.001260944,0.00228892,0.0003038424,0.0013671,0.002238394,0.00189941,0.04236351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005716294,"about_ca_system_score_gemma":0.0008303718,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004392587,"about_ca_topic_score_gemma":0.007152287,"domain_scores_codex":[0.9993777,0.00009939729,0.00004049937,0.0001351456,0.0002601455,0.00008697942],"domain_scores_gemma":[0.9990535,0.0003137256,0.00009109124,0.0002346163,0.0001779026,0.0001290388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00103304,0.00008217782,0.003537958,0.003184313,0.0004672232,0.0005687551,0.0005816473,0.003173705,0.1317708,0.005126555,0.68524,0.1652338],"study_design_scores_gemma":[0.0004898086,0.0001096058,0.01336593,0.0002935085,0.0002217239,0.001656173,0.0002314177,0.04010183,0.1292249,0.01382285,0.80002,0.0004622038],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.007533677,0.00133253,0.3229776,0.0005509983,0.0002083046,0.0001527527,0.1801288,0.4776269,0.009488533],"genre_scores_gemma":[0.0726357,0.001602091,0.44858,0.0009865221,0.0001414721,0.001262696,0.3633413,0.09046903,0.02098115],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.09203953,"threshold_uncertainty_score":0.3079029,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00881905620344901,"score_gpt":0.2432857002308353,"score_spread":0.2344666440273863,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}