{"id":"W2148703390","doi":"10.1128/iai.72.3.1537-1547.2004","title":"The<i>Burkholderia cepacia</i>Epidemic Strain Marker Is Part of a Novel Genomic Island Encoding Both Virulence and Metabolism-Associated Genes in<i>Burkholderia cenocepacia</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":140,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Trust","keywords":"Biology; Burkholderia cenocepacia; Virulence; Genomic island; Burkholderia cepacia complex; Pathogenicity island; Genetics; Gene; Burkholderia; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001141411,0.0002206256,0.0004520257,0.0001595227,0.0003266225,0.00006602638,0.00008647986,0.0001247992,0.00005079887],"category_scores_gemma":[0.000790091,0.0001771781,0.000072909,0.0003724179,0.0004069845,0.0002539483,0.0001126139,0.0004227649,0.000002383471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001276085,"about_ca_system_score_gemma":0.0001477011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002670122,"about_ca_topic_score_gemma":0.00130995,"domain_scores_codex":[0.9984307,0.0001714512,0.0004947433,0.0002480383,0.0002479034,0.0004071279],"domain_scores_gemma":[0.9989271,0.0003126759,0.0002087778,0.0002960188,0.0001176365,0.0001378281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003002018,0.0002913829,0.0443834,0.0001200038,0.0001240719,0.00000321012,0.001167422,0.00003282979,0.9455638,0.0001866865,0.00008993338,0.00773707],"study_design_scores_gemma":[0.006107806,0.0003103447,0.94763,0.0004810639,0.00009524464,0.0001075169,0.0007290519,0.0003637412,0.03156343,0.0009253549,0.01138091,0.0003055558],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941843,0.003931218,0.0002527086,0.0003111818,0.0001833188,0.0004490179,0.0001086657,0.00003666246,0.0005429284],"genre_scores_gemma":[0.9891589,0.01020533,0.0002500586,0.0001732865,0.00005048574,0.00002730457,0.00001753157,0.00002153734,0.00009562104],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9140003,"threshold_uncertainty_score":0.7225112,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02605092476837402,"score_gpt":0.2943530587582686,"score_spread":0.2683021339898946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}