{"id":"W2148833420","doi":"10.1002/pmic.200600979","title":"Outer membrane proteome of <b><i>Actinobacillus pleuropneumoniae</i></b>: LC‐MS/MS analyses validate <b><i>in silico</i></b> predictions","year":2007,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Biological Sciences; McGill University","funders":"","keywords":"Proteome; Actinobacillus pleuropneumoniae; In silico; Bacterial outer membrane; Biology; Microbiology; Proteomics; Computational biology; Genome; Actinobacillus; Membrane protein; Escherichia coli; Bacteria; Biochemistry; Gene; Serotype; Genetics; Membrane","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001001903,0.0003067841,0.0005127724,0.0006137106,0.000225085,0.00003543793,0.0003375401,0.0003367559,0.0007884135],"category_scores_gemma":[0.0002270358,0.0002844849,0.000249257,0.0007898135,0.0003515211,0.0002057564,0.000192762,0.0006430489,0.0003220459],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001210318,"about_ca_system_score_gemma":0.0001786776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001218156,"about_ca_topic_score_gemma":0.0003448241,"domain_scores_codex":[0.9974658,0.0002594352,0.0008265124,0.0005287294,0.0001110122,0.0008085365],"domain_scores_gemma":[0.9986667,0.000167817,0.0002484199,0.0005900396,0.0002280028,0.00009901227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004073652,0.0005403288,0.005611019,0.0001142905,0.0001516756,0.00002532445,0.0001838923,0.0002897715,0.9916898,0.000175305,0.0002605476,0.0005506543],"study_design_scores_gemma":[0.001617722,0.0002339237,0.006156122,0.00006894858,0.000066202,0.0001403006,0.00009598158,0.00004497217,0.9856161,0.0001140783,0.005543985,0.0003016441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871868,0.0004771798,0.006011555,0.0001822409,0.0004081216,0.001583591,0.0002522278,0.0001361441,0.003762129],"genre_scores_gemma":[0.9974717,0.0001897184,0.0006277662,0.00006986705,0.0000783545,0.0001186251,0.0001240513,0.00004464585,0.001275298],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01028486,"threshold_uncertainty_score":0.9999607,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04112557813729373,"score_gpt":0.3262876906453427,"score_spread":0.285162112508049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}