{"id":"W2148964874","doi":"10.1073/pnas.1221376110","title":"Is junk DNA bunk? A critique of ENCODE","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":429,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"ENCODE; DNA; Art; Computational biology; Biology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002937295,0.00005470711,0.00008400642,0.00004411376,0.00004859232,0.00001002139,0.0004397927,0.00007001832,0.00002137597],"category_scores_gemma":[0.0003698198,0.00003982325,0.00006164941,0.0001681644,0.0004441955,0.00001250481,0.0001246401,0.0000456237,9.47107e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000648631,"about_ca_system_score_gemma":0.00004413693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002318976,"about_ca_topic_score_gemma":1.450925e-7,"domain_scores_codex":[0.9992432,0.000001932346,0.0001971856,0.0001468399,0.0003220551,0.00008876504],"domain_scores_gemma":[0.9994057,0.00002661407,0.0002065286,0.000008493758,0.0003292913,0.00002331646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000004344019,0.00002337936,0.003124444,0.00002922783,0.00000849625,4.788889e-10,0.00005150401,0.00001721752,0.9795423,0.008724831,0.008278142,0.0001961438],"study_design_scores_gemma":[0.00008847957,0.00006153005,0.01894708,0.00002576196,0.00000496354,0.000001945068,0.00007552845,0.0001416399,0.9562393,0.02298537,0.001379893,0.0000485429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903038,0.0002407303,0.000002070554,0.002871002,0.00001481761,0.0001076866,0.00002818169,0.000001196485,0.006430559],"genre_scores_gemma":[0.997812,0.0001767969,0.0009881045,0.000771479,0.00007391828,0.000009167928,2.20459e-7,0.000002647219,0.000165675],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.023303,"threshold_uncertainty_score":0.1636657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02235804123122618,"score_gpt":0.2992677566869842,"score_spread":0.276909715455758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}