{"id":"W2149170785","doi":"10.1186/gb-2012-13-10-r89","title":"Epigenetic interplay between mouse endogenous retroviruses and host genes","year":2012,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia; Terry Fox Research Institute; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research","keywords":"Endogenous retrovirus; Biology; DNA methylation; Euchromatin; Transposable element; Epigenetics; Genetics; Gene; RNA-Directed DNA Methylation; Promoter; Long terminal repeat; Epigenetics of physical exercise; Heterochromatin; Methylation; Chromatin; Gene expression; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002061658,0.0002631846,0.0001646721,0.0004100171,0.0001488104,0.0004329242,0.0002854635,0.0002615477,0.001186633],"category_scores_gemma":[0.0001880895,0.0001740609,0.0002315204,0.0001810908,0.0002824035,0.000218183,0.0003104577,0.0004675388,0.0002854823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004045019,"about_ca_system_score_gemma":0.0001662295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000412316,"about_ca_topic_score_gemma":0.0006240124,"domain_scores_codex":[0.999703,0.00003837561,0.00001846036,0.0001086995,0.00007777596,0.00005356675],"domain_scores_gemma":[0.9997911,0.00004435673,0.00006594672,0.0000348241,0.00002554491,0.00003828898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006855117,0.000006809075,0.0008837687,0.00002343221,0.000006445227,0.00003091503,0.00001896435,0.00006168679,0.9975109,0.0002327411,0.00001106416,0.001144704],"study_design_scores_gemma":[0.00001241712,0.0002401197,0.01709874,0.00001565549,0.00003954496,0.0004009187,0.00006036226,0.00150256,0.9773333,0.0002514083,0.003036873,0.000008156914],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886968,0.00274065,0.006098295,0.00004494733,0.00001876888,0.0000141618,0.0003516916,0.0001304185,0.001904316],"genre_scores_gemma":[0.9933499,0.0005011812,0.003087195,0.0000439521,0.000009557602,0.00002238605,0.0005378798,0.00004166416,0.002406351],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001186633,"threshold_uncertainty_score":0.003969729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04294307225840003,"score_gpt":0.2537534500638064,"score_spread":0.2108103778054064,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}