{"id":"W2149170785","doi":"10.1186/gb-2012-13-10-r89","title":"Epigenetic interplay between mouse endogenous retroviruses and host genes","year":2012,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia; Terry Fox Research Institute; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research","keywords":"Endogenous retrovirus; Biology; DNA methylation; Euchromatin; Transposable element; Epigenetics; Genetics; Gene; RNA-Directed DNA Methylation; Promoter; Long terminal repeat; Epigenetics of physical exercise; Heterochromatin; Methylation; Chromatin; Gene expression; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001203217,0.0001286862,0.0001746218,0.00001368012,0.000176533,0.00002102204,0.0001568332,0.0001226617,0.0004358578],"category_scores_gemma":[0.00002568886,0.00005207401,0.00004595116,0.0001080103,0.00009152995,0.00004199394,0.0001342078,0.00006289215,0.0001264654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001474187,"about_ca_system_score_gemma":0.00000475066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001804563,"about_ca_topic_score_gemma":0.0001162134,"domain_scores_codex":[0.9990979,0.00008235503,0.0001730443,0.000215271,0.00004433535,0.0003871333],"domain_scores_gemma":[0.9995635,0.0001406322,0.00005683607,0.00005946411,0.00002566063,0.0001539795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000002870542,0.00001991417,0.331457,0.000001363135,0.00001468419,2.578538e-7,0.00009726011,7.592445e-8,0.6571298,0.0001225482,0.000003915718,0.01115035],"study_design_scores_gemma":[0.00008647714,0.0003199341,0.9002866,0.000001363571,0.00002185311,0.00002188844,0.00007146403,4.685258e-7,0.02082541,0.0002022226,0.07797585,0.0001864731],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943163,0.004411378,0.00001202702,0.0002725726,0.0001277767,0.0001311873,0.0002263026,0.00004284293,0.0004596165],"genre_scores_gemma":[0.9981486,0.0003435717,0.0001648802,0.0001600894,0.0009126523,0.00001453945,0.000104731,0.000001237019,0.0001496703],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6363044,"threshold_uncertainty_score":0.4772338,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04294307225840003,"score_gpt":0.2537534500638064,"score_spread":0.2108103778054064,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}