{"id":"W2149204459","doi":"10.1109/bibm.2011.54","title":"Generalized Adjacency in Genetic Networks and the Conservation of Functional Gene Clusters","year":2011,"lang":"en","type":"article","venue":"","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Adjacency list; Schizosaccharomyces pombe; Adjacency matrix; Biology; Computational biology; Vertex (graph theory); Genetics; Computer science; Gene; Saccharomyces cerevisiae; Theoretical computer science; Graph; Algorithm","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005571274,0.0001538174,0.0002399045,0.002509482,0.0006722109,0.001135697,0.0004769874,0.0004492473,0.0008655203],"category_scores_gemma":[0.007669989,0.0001938557,0.0002233831,0.001752764,0.001749962,0.001735085,0.0007531116,0.0003311924,0.00006786086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007998724,"about_ca_system_score_gemma":0.0003565868,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001720757,"about_ca_topic_score_gemma":0.002000132,"domain_scores_codex":[0.9995204,0.0001971101,0.00002057864,0.0001184578,0.0001006466,0.000042765],"domain_scores_gemma":[0.9946972,0.003551244,0.0009960274,0.0003296396,0.0002355585,0.0001901918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002330135,0.00006834412,0.03519255,0.0002890523,0.0001359675,0.0005449458,0.001563899,0.1985634,0.02044106,0.6846586,0.0009123132,0.05739677],"study_design_scores_gemma":[0.00002316908,0.00005083327,0.01822525,0.00002660788,0.0000443604,0.0004709087,0.0004230916,0.2406712,0.002707431,0.7351655,0.0021594,0.00003221135],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8413951,0.0003655117,0.1543655,0.0003700221,0.000007312394,0.00001987908,0.0001347313,0.0001589896,0.003182974],"genre_scores_gemma":[0.9856218,0.0001185829,0.01384119,0.00001440447,0.000009332064,0.00001653343,0.00009422598,0.00001002579,0.0002739789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002509482,"threshold_uncertainty_score":0.005803585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01373606006166767,"score_gpt":0.1900723235586307,"score_spread":0.176336263496963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}