{"id":"W2149341297","doi":"10.1099/ijs.0.001123-0","title":"Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":317,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Vlaamse regering; Universiteit Gent; Cystic Fibrosis Trust; Cystic Fibrosis Foundation","keywords":"Multilocus sequence typing; Biology; Lineage (genetic); Genetics; Burkholderia cepacia complex; Phylogenetics; Microbiology; Evolutionary biology; Gene; Burkholderia; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008933285,0.0004031052,0.001205195,0.0003311384,0.0003064336,0.0001137343,0.0005590483,0.0001397398,0.0003377001],"category_scores_gemma":[0.0004996748,0.0002695184,0.000200225,0.0001757771,0.0009284834,0.0002575807,0.0002673111,0.0004290654,0.00002904956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000429292,"about_ca_system_score_gemma":0.0002050996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008418623,"about_ca_topic_score_gemma":0.00007695748,"domain_scores_codex":[0.9967378,0.0002632464,0.001607746,0.0004097423,0.000545873,0.0004356397],"domain_scores_gemma":[0.9967158,0.0005823052,0.001155482,0.0003434784,0.0009508108,0.0002521641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00124647,0.0003414556,0.004062699,0.00124214,0.0006554654,0.0001704104,0.0005140194,0.00006356999,0.9779545,0.003602349,0.01010286,0.0000440839],"study_design_scores_gemma":[0.03005038,0.004269673,0.6504325,0.02396868,0.001261555,0.2197514,0.007830075,0.006494851,0.005613191,0.002154855,0.04649179,0.001681062],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9766691,0.006134269,0.004326448,0.008667915,0.00121015,0.001560404,0.0006325628,0.00004073208,0.0007583646],"genre_scores_gemma":[0.9910994,0.0002227978,0.00636145,0.0007196181,0.000580736,0.00001386292,0.0002192418,0.00002440885,0.0007584493],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9723413,"threshold_uncertainty_score":0.9999757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05170563135590257,"score_gpt":0.3088424450781021,"score_spread":0.2571368137221995,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}