{"id":"W2149363819","doi":"10.1186/1743-422x-10-202","title":"HeLa cell response proteome alterations induced by mammalian reovirus T3D infection","year":2013,"lang":"en","type":"article","venue":"Virology Journal","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Stable isotope labeling by amino acids in cell culture; Biology; Proteome; Quantitative proteomics; Immune system; Cell biology; Proteomics; Transcriptome; Cytosol; Effector; Cellular compartment; Innate immune system; Virus; Cell; Gene expression; Gene; Biochemistry; Virology; Immunology; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001012258,0.0001465252,0.0003069328,0.0002747957,0.0002611158,0.00004849497,0.00009544391,0.000219366,0.001639336],"category_scores_gemma":[0.0006598713,0.0001198296,0.0001113844,0.0001223122,0.0001223502,0.0002323036,0.00004608262,0.001085329,0.0007774354],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001108496,"about_ca_system_score_gemma":0.000120194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002093597,"about_ca_topic_score_gemma":0.000020429,"domain_scores_codex":[0.9975002,0.001069585,0.0004419644,0.0002147827,0.0001684493,0.0006050433],"domain_scores_gemma":[0.9989849,0.00005135827,0.0001493227,0.0001974419,0.0001499902,0.0004670242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001434573,0.0001451332,0.02390652,0.000009318234,0.00003340044,0.00009528645,0.0000524515,0.000004126871,0.9237807,0.000003416527,0.0491761,0.001359013],"study_design_scores_gemma":[0.006792985,0.01579286,0.8843533,0.00005984033,0.00006325479,0.01008325,0.00006278324,0.000430125,0.03173315,0.0008670603,0.04947376,0.0002876215],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9768277,0.00009472718,0.001428726,0.02051391,0.0002400064,0.000451928,0.000006540479,0.00003210384,0.000404329],"genre_scores_gemma":[0.9934192,0.000151479,0.0007566924,0.002974897,0.0003636074,0.00009689977,0.00001627974,0.00002026831,0.002200718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8920475,"threshold_uncertainty_score":0.9992733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0218796704537438,"score_gpt":0.3054723068285447,"score_spread":0.2835926363748009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}