{"id":"W2149437571","doi":"10.1128/jcm.00536-14","title":"Population Analysis of Streptococcus suis Isolates from Slaughtered Swine by Use of Minimum Core Genome Sequence Typing","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Typing; Biology; Genome; Population; Sequence analysis; Whole genome sequencing; Sequence (biology); Multilocus sequence typing; Genetics; Microbiology; Virology; Genotype; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005409216,0.0002166407,0.0003449865,0.001139481,0.0002126026,0.0003149672,0.0001475094,0.00025073,0.0003421176],"category_scores_gemma":[0.0008446384,0.000111976,0.0002938132,0.0006151291,0.0001839627,0.0001233889,0.000210122,0.0002412337,0.00009293886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001463785,"about_ca_system_score_gemma":0.0001820881,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001732015,"about_ca_topic_score_gemma":0.001713981,"domain_scores_codex":[0.9996129,0.00008475532,0.00003646178,0.0001231402,0.00008747735,0.0000553579],"domain_scores_gemma":[0.9995713,0.0001293391,0.000103706,0.00004019835,0.00009689209,0.00005866382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004406042,0.0001765628,0.7863866,0.00002880348,0.00008579514,0.000219916,0.0004722643,0.0004334404,0.1977485,0.00007736898,0.00005961201,0.01387052],"study_design_scores_gemma":[0.000007893322,0.0005816201,0.9889769,0.000005372208,0.00004302903,0.0004933729,0.000258153,0.001967117,0.007379539,0.00003839035,0.0002394206,0.000009136413],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989887,0.00002073683,0.0008084352,0.000003182484,0.000001745461,0.000008087653,0.0000689764,0.000003468339,0.00009659397],"genre_scores_gemma":[0.997825,0.00003116003,0.001559235,0.000009895976,0.000003263577,0.00001057041,0.0004813042,0.000002975544,0.00007661372],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001732015,"threshold_uncertainty_score":0.003443837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1155058827065941,"score_gpt":0.4005233316060122,"score_spread":0.285017448899418,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}