{"id":"W2149582283","doi":"10.1093/sysbio/syt003","title":"Lateral Gene Transfer from the Dead","year":2013,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Institut National de Physique Nucléaire et de Physique des Particules; Agence Nationale de la Recherche","keywords":"Biology; Phylogenetics; Phylogenetic tree; Lineage (genetic); Horizontal gene transfer; Evolutionary biology; Macroevolution; Genetic algorithm; Molecular phylogenetics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004445446,0.0002696105,0.000362147,0.0006630701,0.0006266282,0.0009443716,0.0005378815,0.0004951821,0.003580099],"category_scores_gemma":[0.001615267,0.0002207463,0.0005606995,0.0006069538,0.0008701949,0.0009974597,0.001077369,0.0005593282,0.0007440514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006177012,"about_ca_system_score_gemma":0.0004023619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004300218,"about_ca_topic_score_gemma":0.0005776304,"domain_scores_codex":[0.9997701,0.00003312217,0.00001433564,0.00009510748,0.00006313533,0.00002419734],"domain_scores_gemma":[0.999532,0.0001988148,0.0000743636,0.0001192763,0.00003397183,0.00004167686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0007176319,0.00009769954,0.1053943,0.000679162,0.000176306,0.002009113,0.001852906,0.0157715,0.6694683,0.04362986,0.0005972114,0.159606],"study_design_scores_gemma":[0.0001052983,0.001014924,0.1907076,0.0003002274,0.000395031,0.01052131,0.001985691,0.1242288,0.4750943,0.147757,0.04766874,0.0002210335],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9333475,0.0006441703,0.06104098,0.0001552981,0.00003428495,0.00003434412,0.0004048517,0.0002474609,0.004091188],"genre_scores_gemma":[0.9850608,0.0002493068,0.01220833,0.00007882971,0.000005842536,0.00001919637,0.0005402495,0.00004793144,0.001789434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003580099,"threshold_uncertainty_score":0.0119766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01152736331802217,"score_gpt":0.2133231248667484,"score_spread":0.2017957615487262,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}