{"id":"W2149613009","doi":"10.1128/jcm.02392-08","title":"Molecular Characterization of Syphilis in Patients in Canada: Azithromycin Resistance and Detection of<i>Treponema pallidum</i>DNA in Whole-Blood Samples versus Ulcerative Swabs","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Health Services; Alberta Health; Calgary Laboratory Services; Provincial Laboratory of Public Health; Capital District Health Authority; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Primary Syphilis; Latent Syphilis; Azithromycin; Medicine; Sexually transmitted disease; Treponematosis; Polymerase chain reaction; Antibiotics; Virology; Immunology; Biology; Microbiology; Gene; Human immunodeficiency virus (HIV); Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002814911,0.0002352089,0.000338863,0.001116885,0.0007880594,0.0005624959,0.000362223,0.000350763,0.001038269],"category_scores_gemma":[0.001975612,0.0002060298,0.0001199802,0.001086451,0.0004296842,0.0001532998,0.0002037463,0.0003178583,0.0001464469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002483378,"about_ca_system_score_gemma":0.002380766,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5790097,"about_ca_topic_score_gemma":0.6400005,"domain_scores_codex":[0.9996037,0.0000372886,0.00002618227,0.00004436441,0.000180662,0.0001078511],"domain_scores_gemma":[0.9993762,0.00009350776,0.00008584871,0.00001505921,0.0002447011,0.0001846564],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005115077,0.00008237303,0.9632718,0.00008728274,0.00003107962,0.001619028,0.0009577512,0.00009752307,0.02224658,0.00005842448,0.0003396765,0.01069704],"study_design_scores_gemma":[0.00001614921,0.0001687117,0.9934304,0.00001690197,0.00002543706,0.001756543,0.0008467591,0.0004617439,0.002773175,0.00001342322,0.0004845999,0.000006159375],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987197,0.0002727668,0.00009491245,0.00006250089,0.000003463892,0.00002347461,0.0001295812,0.000005403771,0.0006881198],"genre_scores_gemma":[0.9988695,0.0002347581,0.0003874056,0.00006600038,0.00000455559,0.000005512964,0.0001997385,0.00000231784,0.0002301629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4209903,"threshold_uncertainty_score":0.8469393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02523442865929519,"score_gpt":0.300255657328111,"score_spread":0.2750212286688158,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}