{"id":"W2149613009","doi":"10.1128/jcm.02392-08","title":"Molecular Characterization of Syphilis in Patients in Canada: Azithromycin Resistance and Detection of<i>Treponema pallidum</i>DNA in Whole-Blood Samples versus Ulcerative Swabs","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Health Services; Alberta Health; Calgary Laboratory Services; Provincial Laboratory of Public Health; Capital District Health Authority; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Primary Syphilis; Latent Syphilis; Azithromycin; Medicine; Sexually transmitted disease; Treponematosis; Polymerase chain reaction; Antibiotics; Virology; Immunology; Biology; Microbiology; Gene; Human immunodeficiency virus (HIV); Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004485982,0.0001117527,0.0008289617,0.0001752611,0.000007475848,0.000002060493,0.00005196481,0.0001384063,0.000005470618],"category_scores_gemma":[0.0007327093,0.00009104362,0.00008128806,0.000183629,0.00006324341,0.00004954452,0.00001309153,0.0002388951,1.467325e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001616509,"about_ca_system_score_gemma":0.000327845,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.007436402,"about_ca_topic_score_gemma":0.3023097,"domain_scores_codex":[0.9978012,0.0002709625,0.001544413,0.0001708552,0.00007455543,0.0001379456],"domain_scores_gemma":[0.998455,0.0004096054,0.0008046183,0.0001066797,0.0001672856,0.00005684498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003134425,0.001009336,0.7574499,0.00002585986,0.00007790823,0.00007741841,0.000092133,0.000005459205,0.2348559,0.00001133148,0.00000437924,0.003255983],"study_design_scores_gemma":[0.01111996,0.00213909,0.9295545,0.0003863237,0.00006452569,0.0000109285,0.00003524014,0.000001854605,0.05652879,0.00003724229,0.00006365815,0.00005784722],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984673,0.0002736235,0.000005863144,0.0008310921,0.0001601897,0.0002153132,0.0000370325,8.698309e-7,0.000008667335],"genre_scores_gemma":[0.9993252,0.0003548875,0.0001109835,0.0001487747,0.00002731061,0.00000195904,0.00002414595,0.000005311135,0.000001402117],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2948733,"threshold_uncertainty_score":0.9991732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02523442865929519,"score_gpt":0.300255657328111,"score_spread":0.2750212286688158,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}