{"id":"W2149689345","doi":"10.1186/gb-2011-12-11-r115","title":"Whole genome sequencing of penicillin-resistant Streptococcus pneumoniae reveals mutations in penicillin-binding proteins and in a putative iron permease","year":2011,"lang":"en","type":"article","venue":"Genome biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"University of Toronto; Canada Research Chairs; McGill University; Canadian Institutes of Health Research; Université Laval","keywords":"Penicillin binding proteins; Streptococcus pneumoniae; Penicillin; Gene; Microbiology; Biology; Whole genome sequencing; Genome; Permease; Mutation; Genetics; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004080159,0.0002127846,0.0005328333,0.0005953062,0.00009030883,0.000005936039,0.00009693348,0.0001946347,0.00007670838],"category_scores_gemma":[0.0001929783,0.0001868694,0.00007924331,0.0004102013,0.0002875551,0.00007072348,0.00006588075,0.0003212815,0.00002319681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003203699,"about_ca_system_score_gemma":0.0002933807,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003323248,"about_ca_topic_score_gemma":0.000553059,"domain_scores_codex":[0.9982036,0.0002061227,0.0006529422,0.0004337566,0.00008790095,0.000415688],"domain_scores_gemma":[0.999179,0.00008563564,0.0002243881,0.0002486349,0.0001200734,0.0001422363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007068525,0.0001305123,0.1020974,0.00009754285,0.00002806612,0.0000982698,0.004681997,0.00005005601,0.8925073,0.0001186929,2.090067e-7,0.0001193116],"study_design_scores_gemma":[0.002093218,0.001434445,0.985734,0.0001408457,0.00008654463,0.00006187005,0.003664378,0.00007378446,0.005097799,0.0008529688,0.0004210291,0.0003390588],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997105,0.0003518905,0.00004984241,0.0001945942,0.0000476123,0.001270233,0.0002232511,0.00002697174,0.0007305752],"genre_scores_gemma":[0.9991391,0.00005202448,0.0002266271,0.0001109893,0.00003680864,0.0002130778,0.0000867423,0.00002193838,0.0001127197],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8874095,"threshold_uncertainty_score":0.7620315,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04561069981671511,"score_gpt":0.2863580867299844,"score_spread":0.2407473869132693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}