{"id":"W2149942632","doi":"10.1074/mcp.m110.002493","title":"A Proteomic Analysis Reveals Differential Regulation of the σS-Dependent yciGFE(katN) Locus by YncC and H-NS in Salmonella and Escherichia coli K-12","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Centre National de la Recherche Scientifique; Keio University","keywords":"rpoS; Biology; Escherichia coli; Salmonella enterica; Gene; Operon; Regulon; Molecular biology; Salmonella; Promoter; Transcription (linguistics); Gene expression; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000849565,0.0003066887,0.0003017874,0.0001813638,0.00008940048,0.0002735758,0.0001311529,0.0001934478,0.0003653148],"category_scores_gemma":[0.0001568906,0.0001587783,0.0002384664,0.0001712328,0.0001838093,0.0001084898,0.0001891077,0.0002074352,0.0002198619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002275134,"about_ca_system_score_gemma":0.000203163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001610146,"about_ca_topic_score_gemma":0.001728972,"domain_scores_codex":[0.9998969,0.000009776505,0.00001208608,0.00002626564,0.00003270436,0.00002241778],"domain_scores_gemma":[0.9998589,0.00002166237,0.00003971978,0.00001254491,0.00002902773,0.00003812422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004412246,0.000004377636,0.0003245158,0.00001092985,0.000002662123,0.00001742294,0.000008831218,0.00001408519,0.9993851,0.000006712839,0.000004879299,0.000176369],"study_design_scores_gemma":[0.000009684811,0.0002223836,0.08663817,0.000008566032,0.00002824666,0.0003984118,0.0001390091,0.001027899,0.910854,0.00002850477,0.0006313429,0.00001386025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984885,0.00026225,0.0006148386,0.00002683208,0.000004233019,0.000006146192,0.0003804974,0.0000161061,0.0002004142],"genre_scores_gemma":[0.9958677,0.000252764,0.001343101,0.00003922125,0.000003226423,0.00001689261,0.001446683,0.00001801354,0.001012312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001610146,"threshold_uncertainty_score":0.003201604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002719167912458943,"score_gpt":0.1832335648321095,"score_spread":0.1805143969196506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}