{"id":"W2149980799","doi":"10.1111/j.1462-5822.2009.01404.x","title":"Bacterial membrane vesicles deliver peptidoglycan to NOD1 in epithelial cells","year":2009,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":444,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Peptidoglycan; NOD1; Biology; Bacterial outer membrane; Microbiology; Innate immune system; Cell biology; Secretion; Immune system; Bacteria; Immunology; NOD2; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002159761,0.0003015432,0.0004831856,0.0002803872,0.0001332227,0.00002435937,0.0003031911,0.0004760244,0.002919412],"category_scores_gemma":[0.00002283237,0.0002789726,0.0001284379,0.0002029732,0.00009926271,0.00007691532,0.00008936317,0.0002852754,0.003394909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006428733,"about_ca_system_score_gemma":0.00004317721,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002254347,"about_ca_topic_score_gemma":0.0001786689,"domain_scores_codex":[0.9981019,0.0002666844,0.0004614064,0.0005198914,0.000007610501,0.0006424985],"domain_scores_gemma":[0.9993826,0.00005726973,0.00009315003,0.0003562291,0.0000617996,0.00004898389],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002905587,0.0001560427,0.00009631908,0.000005161329,0.00003380561,0.000008185829,0.0002181077,0.000009880847,0.9930153,0.0001914959,0.002342369,0.003632722],"study_design_scores_gemma":[0.001347533,0.0003798704,0.001624789,0.00001209909,0.00001795965,0.00005655535,0.00003101377,4.497134e-7,0.8006171,0.00003871876,0.1956037,0.0002701874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950968,0.000244444,0.0001024681,0.0005743089,0.003032627,0.0003588246,0.0001359574,0.00008564968,0.0003689404],"genre_scores_gemma":[0.9973735,0.00003239246,0.0001754389,0.0004092438,0.0002915432,0.00001319818,0.0003950348,0.00002165158,0.001287996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1932614,"threshold_uncertainty_score":0.9999663,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008490995904036045,"score_gpt":0.2094950921641553,"score_spread":0.2010040962601193,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}